View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_low_3 (Length: 536)
Name: NF15131_low_3
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 8499205 - 8498941
Alignment:
| Q |
1 |
agttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgacattttccaac |
100 |
Q |
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| T |
8499205 |
agttaatttaccaaagacaagtgtaaattaaatgattgccaaactatggacgtgtggttgtaggatgtatgtagtatttagatttgtgacattttccaac |
8499106 |
T |
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| Q |
101 |
ctgacgcaccatcttacgcaacaatttgggatagtnnnnnnntaataataaatatcgtggaattttctaaaaatccaaatttcattttccatctggtcca |
200 |
Q |
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| T |
8499105 |
ctgacgcaccatcttacgcaacaatttgggatagtaaaaaaataataataaatatcgtggaattttctaaaaatccaaatttcattttccatctggtcca |
8499006 |
T |
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| Q |
201 |
cgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
265 |
Q |
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| T |
8499005 |
cgttccttcaattccaaactctttttataccctaatccattgcactattgaaagacttcatctac |
8498941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 371 - 518
Target Start/End: Complemental strand, 8498830 - 8498683
Alignment:
| Q |
371 |
ggacaaagcatggggtctagcacttgatacttcttcatcttctccaattccaatatctcactctcacccttttttaccttctaaacaaccatcttctact |
470 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8498830 |
ggacaaagcatggggtctagctcttgatacttcttcatcttctccaattccaatatctcactctcacccttttttaccttctaaacaaccatcttctact |
8498731 |
T |
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| Q |
471 |
cataccaacgatagaatgtttcctattctaggatttcctgtcaacctt |
518 |
Q |
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| T |
8498730 |
cataccaacgatagaatgtttcctattctaggatttcctgtcaacctt |
8498683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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