View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15131_low_7 (Length: 416)
Name: NF15131_low_7
Description: NF15131
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15131_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 38446612 - 38446235
Alignment:
| Q |
19 |
gttttctcgtttagatctataacactgtcgtttaaagatgaaactttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgag |
118 |
Q |
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| T |
38446612 |
gttttctcgtttagatctatagcactgtcgtttaaagatgaaactttgtcgaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgag |
38446513 |
T |
|
| Q |
119 |
atagatctctatgaaccgttgattcagaagcagatcttagaagcttagggtttggatcagagtcttccagacccatgagttttgcaacgacgctggtgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38446512 |
atagatctctatgaaccgttgattcagaagcagatcttagaagcttagggtttggatcagagtcttccagacccatgagttttgcaacgacgctggtgga |
38446413 |
T |
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| Q |
219 |
agtggaacgtcgtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaacttct |
318 |
Q |
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| T |
38446412 |
agtggaacgtcgtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctgctatccaacgaaagtcttggagcttct |
38446313 |
T |
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| Q |
319 |
ctggtgaatttccatggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggt |
396 |
Q |
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| T |
38446312 |
ctggtgaatttccatggagatttcgttccttctttgaaatcaaaaaccggaagaaccgatgtcttttctggttgcggt |
38446235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 214 - 404
Target Start/End: Complemental strand, 20210329 - 20210139
Alignment:
| Q |
214 |
gtggaagtggaacgtcgtcgtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaa |
313 |
Q |
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| T |
20210329 |
gtggaagtggaacatcgtcgtttttcttcctcttttagatgaattttcattgttccttttgcatctacaacggcttttctatctaacgatagtcttggag |
20210230 |
T |
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| Q |
314 |
cttctctggtgaatttccatggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggtgatgatgt |
404 |
Q |
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| T |
20210229 |
cttctttggtggatttccatggagattttgttccttctttgaaatcgaaaactggaagaaccattgtcttttcaggttaaggtgttgatgt |
20210139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 20210436 - 20210338
Alignment:
| Q |
69 |
gaattgctttaactggaaatttgtagtgtcaaagaaacgatactgttgagat---agatctctatgaaccgttgattcagaagcagatcttagaagctt |
164 |
Q |
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| T |
20210436 |
gaattgcttaaattggaaatttgtagtgtcaaagaaatgatattgttgagatgttagatctctttgaaccgttgattcagaagcaaatcttagaagctt |
20210338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 233 - 404
Target Start/End: Original strand, 2243189 - 2243360
Alignment:
| Q |
233 |
gtttttcttcttctttaggatggatagtcattgttccttttgcatctacaatagctctactatccaacgaaagtcttggaacttctctggtgaatttcca |
332 |
Q |
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|||||||||| ||||| ||||||| | |||||||||||||||||||||| ||||| ||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
2243189 |
gtttttcttcctctttttgatggatttttattgttccttttgcatctacaacggctctgctatcaaacgatggtcttagagcttctctggtgaatttcca |
2243288 |
T |
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| Q |
333 |
tggagatttcgttccttctttgaaatcaaaaacaggaagaaccgatgtcttttctggttgcggtgatgatgt |
404 |
Q |
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|| |||||| ||||||| |||||||| ||||| ||||||| | |||||||||||||| |||| |||||| |
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| T |
2243289 |
tgaagattttgttccttatttgaaattgaaaactggaagaattggtgtcttttctggttaaggtgttgatgt |
2243360 |
T |
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