View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15132_high_11 (Length: 282)

Name: NF15132_high_11
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15132_high_11
NF15132_high_11
[»] chr4 (1 HSPs)
chr4 (1-282)||(39979045-39979324)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 39979045 - 39979324
Alignment:
Q  1 aggaacgagagtatatattattccttagcattttccaaaaagttttatggattgaaaacttttctgaatggtaagaatctagaacaccattgactattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39979045 aggaacgagagtatatattattccttagcattttccaaaaagttttatggattgaaaacttttctgaatggtaagaatctagaacaccattgactattct 39979144  T
Q  101 ttgcattgggaaaaaatgcacaggaaccataggtacaagtatgttcaatctgtgagaaagcataggtttcgcaggaatcattttgtctaaagtgtggcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39979145 ttgcattgggaaaaaatgcacaggaaccataggtacaagtatgttcaatctgtgagaaagcataggtttcgcaggaatcattttgtctaaagtgtggcta 39979244  T
Q  201 tctcctcttatcctctcttcaggaagaacatgttgcaatcatacactactatgttttgtagctagctcatcagaattttcac 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  39979245 tctcctcttatcctctcttcaggaagaacatgttgcaatcatacactactatgttttgtag--agctcatcagaattttcac 39979324  T

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