View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_high_12 (Length: 273)
Name: NF15132_high_12
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 25926145 - 25925889
Alignment:
| Q |
1 |
tgatccatgcactctaagttttatggttaaattacttgtcttaattttagtcaatgtggacatttactacctctaaactttataatcacactttatttgc |
100 |
Q |
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| T |
25926145 |
tgatccatgcactctaagttttatggttaaattacttgtcttaattttagtcaatgtggacatttactacctctaaactttataatcacactttatttgc |
25926046 |
T |
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| Q |
101 |
cttagttttagcttaggtcaaaattctttacctctaagctctataaccactttagttatatttattttgcaacaaaacagaacatgactttactctttag |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25926045 |
cttagttttagcttaggtcaaagttctttacctctaagctctataaccactttagttatatttattttgcaacaaaacagaacatgactttactctttag |
25925946 |
T |
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| Q |
201 |
atttaatgcatgtttagattgacgatgaatagttatctttattttgcaacagaacat |
257 |
Q |
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| T |
25925945 |
atttaatgcatgtttagattgacgatgaatagttatctttattttgcaacaaaacat |
25925889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 25886083 - 25885928
Alignment:
| Q |
15 |
taagttttatggttaaattacttgtcttaattttagtcaatgtggacatttactacctctaaactttataatcacactttatttgccttagttttagctt |
114 |
Q |
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| T |
25886083 |
taagttttatgattacattacttgtcttaattgtactctatttggacatttaatacct-taagctttataatcacactttatttgtcttagttttagttt |
25885985 |
T |
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| Q |
115 |
aggtcaaaattctttacctctaagctctataaccactttagttatatttattttgcaaca |
174 |
Q |
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| T |
25885984 |
atgtcaaacctctttatctctaaggtctataatcac---agttatctttattttgtaaca |
25885928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 25959564 - 25959649
Alignment:
| Q |
89 |
cactttatttgccttagttttagcttaggtcaaaattctttacctctaagctctataaccactttagttatatttattttgcaaca |
174 |
Q |
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||||||||||| ||||||||| || |||||| ||||||| ||||||||| ||||| |||||||||||| |||||||||||||| |
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| T |
25959564 |
cactttatttgttatagttttagtctatgtcaaacttctttatctctaagctttataatcactttagttatttttattttgcaaca |
25959649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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