View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_high_6 (Length: 420)
Name: NF15132_high_6
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 31 - 403
Target Start/End: Original strand, 10299293 - 10299665
Alignment:
| Q |
31 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggca |
130 |
Q |
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| T |
10299293 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggca |
10299392 |
T |
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| Q |
131 |
tggattttttccaccactgctgtggaaacaattagaccttttaattgccctattgattaaagtcacnnnnnnncaccaattaacacaatttaataataac |
230 |
Q |
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| T |
10299393 |
tggattttttccaccactgctgtggaaacaattagaccttttaattgccctattgattaaagtcacaaaaaaacaccaattaacacaatttaataataac |
10299492 |
T |
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| Q |
231 |
aaatctttaaaatttcattcaactttgtcacaaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatatt |
330 |
Q |
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| T |
10299493 |
aaatctttaaaatttcattcaactttgtcacaaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatatt |
10299592 |
T |
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| Q |
331 |
gaacaactccacaaatcttgtacttaaagccaccaaggtatgctctaacagcatcagtgtaagtgtagtttct |
403 |
Q |
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| T |
10299593 |
gaacaactccacaaatcttgtacttaaagccaccaaggtatgctctaacagcatcagtgtaagtgtagtttct |
10299665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 40204276 - 40204131
Alignment:
| Q |
36 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
135 |
Q |
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| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggat |
40204177 |
T |
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| Q |
136 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
181 |
Q |
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| T |
40204176 |
cttttccaccacttctatggaaacaatttgacctttcaattgccct |
40204131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 40208409 - 40208264
Alignment:
| Q |
36 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
135 |
Q |
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| T |
40208409 |
gagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatgtgacatggat |
40208310 |
T |
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| Q |
136 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
181 |
Q |
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| T |
40208309 |
cttttccaccacttctatggaaacaatttgacctttcaattgccct |
40208264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 40200775 - 40200630
Alignment:
| Q |
36 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
135 |
Q |
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|||||||||||||| |||||||| || |||||||||||||| | || | || |||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatgtgacatggat |
40200676 |
T |
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| Q |
136 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
181 |
Q |
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|||||| ||||| || ||||||||||| ||||||| ||||||||| |
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| T |
40200675 |
cttttcccccacttctatggaaacaatttgacctttcaattgccct |
40200630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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