View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15132_low_10 (Length: 369)
Name: NF15132_low_10
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_10 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 18143988 - 18144343
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18143988 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
18144087 |
T |
|
| Q |
101 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144088 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
18144187 |
T |
|
| Q |
201 |
gaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18144188 |
gaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcga |
18144287 |
T |
|
| Q |
301 |
cagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144288 |
cagcagatatatcatagattaatgtgttgatgtaacataatagaacattcatattg |
18144343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 48185304 - 48185628
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
48185304 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaatagaaacaaagttccaataaacggaacccgcagaccatattcttctccaat |
48185403 |
T |
|
| Q |
101 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185404 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctaaccagacgttggaatagtttgcggatttctaacaactagaatggtt |
48185503 |
T |
|
| Q |
201 |
gaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48185504 |
gaaattaataagatagcaattacaacccaagacgtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcga |
48185603 |
T |
|
| Q |
301 |
cagcagatatatcatagattaatgt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
48185604 |
cagcagatatatcatagattaatgt |
48185628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 26842690 - 26842781
Alignment:
| Q |
134 |
gacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaa |
225 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
26842690 |
gacatattcaaagaaattctgaccaattattggaatagtttgtggatttctaacaattagaatgattgaaattaataagatagcaataacaa |
26842781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 356
Target Start/End: Original strand, 48189553 - 48189588
Alignment:
| Q |
321 |
aatgtgttgatgtaacataatagaacattcatattg |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
48189553 |
aatgtgttgatgtaacataatagaacattcatattg |
48189588 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 9293798 - 9294013
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293798 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
9293897 |
T |
|
| Q |
101 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293898 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
9293997 |
T |
|
| Q |
201 |
gaaattaataagatag |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
9293998 |
gaaattaataagatag |
9294013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 234 - 356
Target Start/End: Original strand, 9292295 - 9292417
Alignment:
| Q |
234 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcatagattaatgtgttgatgt |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9292295 |
gtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacaacagatatatcatagattaatgtgttgatgt |
9292394 |
T |
|
| Q |
334 |
aacataatagaacattcatattg |
356 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
9292395 |
aacataatagaacattcatattg |
9292417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 24489255 - 24489470
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489255 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
24489354 |
T |
|
| Q |
101 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489355 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
24489454 |
T |
|
| Q |
201 |
gaaattaataagatag |
216 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24489455 |
gaaattaataagatag |
24489470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 231399 - 231087
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
||||||||||||| |||||||| || |||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
231399 |
taattttccaaggtaaaagagcacccgaccaatttgaaacaaaaataaaaaggaacatagttccaataaagggaacccagggaccatattcttctccaat |
231300 |
T |
|
| Q |
101 |
ctgagttttgctcacgtctcggatgaattcaaggacatattcaaagaaattctgaccggacgttggaatagtttgcggatttctaacaactagaatggtt |
200 |
Q |
| |
|
|||||||||||||| |||||| || || ||||||||||||||||| |||||||| ||| || || || ||||| ||||| | |||| ||| | | |
|
|
| T |
231299 |
ctgagttttgctcaagtctcgaataaactcaaggacatattcaaaaaaattctgcccgtcggtcgggatggtttgtggattccgaacagctatgacaact |
231200 |
T |
|
| Q |
201 |
gaaattaataagatagcaattacaacccaagaggtaataagtacttgagcatgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcga |
300 |
Q |
| |
|
||| || ||||||| |||||| |||||||| || || ||||| || ||||| | ||||||| | ||||||||||||||||| ||||| |||||||| | |
|
|
| T |
231199 |
gaacctagcaagatagtaattacgacccaagaagtgatgagtacctgggcatgaatttgaaaacctcctatttgccaatagaagtgttggcctacttcta |
231100 |
T |
|
| Q |
301 |
cagcagatatatc |
313 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
231099 |
cacccgatatatc |
231087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 150 - 318
Target Start/End: Original strand, 34676485 - 34676652
Alignment:
| Q |
150 |
ttctgaccggacgttggaatagtttgcggatttctaacaactagaatggttgaaattaataagatagcaattacaacccaagaggtaataagtacttgag |
249 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34676485 |
ttctgaccggacat-ggaatagtttgcggatttctaacaattagaatggttgaaattaataagatagcaattacaacccaagaggtaataagcacttgag |
34676583 |
T |
|
| Q |
250 |
catgcacttgaaaatcccctatttgccaatagaaatgttgacctacttcgacagcagatatatcataga |
318 |
Q |
| |
|
|||||||| ||| || ||||||||||||| ||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
34676584 |
tatgcacttaaaactcacctatttgccaatgaaaatgtttccctacttccacaacagatatatcataga |
34676652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 22965974 - 22965856
Alignment:
| Q |
26 |
tgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaatctgagttttgctcacgtctcggatg |
125 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||| | || |||| |||||||||||||| ||| |||||||| || || | ||| ||| |
|
|
| T |
22965974 |
tgaccaattcgaaacaaaaataaataaaaacaaagctccaataattgaaatccacataccatattcttctctaatttgagtttttcttacttatcgaatg |
22965875 |
T |
|
| Q |
126 |
aattcaaggacatattcaa |
144 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22965874 |
aattcaaggacatattcaa |
22965856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 25434 - 25503
Alignment:
| Q |
31 |
aattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25434 |
aattcgaaacaaaaataaataggaacaaagttccaataaacggaacccaaggaccatattcttctccaat |
25503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 8868213 - 8868319
Alignment:
| Q |
1 |
taattttccaaggcaaaagagcccctgaccaattcgaaacaaaaataaataggaacaaagttccaataaacggaacccacggaccatattcttctccaat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||| ||||| ||| | || | ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
8868213 |
taattttccaagacaaaagagcccctgacaaattccaaaaaaaaaaaaaaa--aaaagggttccaataaatggaacccactgaccatattcttctccaat |
8868310 |
T |
|
| Q |
101 |
ctgagtttt |
109 |
Q |
| |
|
|||| |||| |
|
|
| T |
8868311 |
ctgattttt |
8868319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 116
Target Start/End: Original strand, 25719928 - 25719975
Alignment:
| Q |
69 |
aacggaacccacggaccatattcttctccaatctgagttttgctcacg |
116 |
Q |
| |
|
||||||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
25719928 |
aacggaacccaaggacaatattcttccccaatctgagttttgctcacg |
25719975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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