View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_low_11 (Length: 352)
Name: NF15132_low_11
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_11 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: scaffold0171 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 10905 - 11160
Alignment:
| Q |
18 |
atttgcataggtatagaatttccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaa |
117 |
Q |
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| T |
10905 |
atttgcataggtatagaatttccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaa |
11004 |
T |
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| Q |
118 |
gaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaattcatgagaacaataacactgagattgggatcaagtta |
217 |
Q |
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| T |
11005 |
gaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaattcatgagaacaataacactgagattgggatcaagtta |
11104 |
T |
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| Q |
218 |
aacaaggagaatgtcacgagtttcatcgttgtaagcaattttcctaacttccatat |
273 |
Q |
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| T |
11105 |
aacaaggagaatgtcacgagtttcatcgttgtaagcaattctcctaacttccatat |
11160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 24529 - 24623
Alignment:
| Q |
92 |
ataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaattcatga |
186 |
Q |
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| T |
24529 |
ataagggagcatcaagaggaaatgaagaaaagaaaggaaaatggcgaaggtgctcatgttaaggatttgcttgatattttgttggaaattcatga |
24623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 189
Target Start/End: Original strand, 19106 - 19217
Alignment:
| Q |
78 |
tgatggagatggcgataagggaccgtcaaaaggaaaggaagaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttgga |
177 |
Q |
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| T |
19106 |
tgatggagagggtgataagggagcatcaagtggaaatgaagaaaaggaaagaaaagggtgaaggtgatcatgttagggatctacttgatattttgttaga |
19205 |
T |
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| Q |
178 |
aattcatgagaa |
189 |
Q |
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| T |
19206 |
aatgcatgagaa |
19217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 180
Target Start/End: Complemental strand, 38808755 - 38808606
Alignment:
| Q |
33 |
gaatttccaaaaggcttaaagggatgcagaaaaggatggaaacaatgatggagatggcgataagggaccgtcaaaaggaaaggaagaa-aataaaggaaa |
131 |
Q |
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| T |
38808755 |
gaattaccaaaaggctttaagggactcagaacagaattgacacaatgatggagagggtgataagggagcatcaagaggaaaggaggaataaggaaggaaa |
38808656 |
T |
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| Q |
132 |
acagtgaaggttctcatgttagggatcttcttgatatttt-gttggaaat |
180 |
Q |
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| T |
38808655 |
gtggtgaaggtgcttgtgttagggatctgcttgatattttggttggaaat |
38808606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 11168 - 11106
Alignment:
| Q |
117 |
agaaaataaaggaaaacagtgaaggttctcatgttagggatcttcttgatattttgttggaaa |
179 |
Q |
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| T |
11168 |
agaaaagaaaggtaaagggtgaaggtgctcatgatagggatatacttgatattttgttggaaa |
11106 |
T |
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