View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15132_low_2 (Length: 728)

Name: NF15132_low_2
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15132_low_2
NF15132_low_2
[»] chr6 (12 HSPs)
chr6 (465-597)||(30833726-30833857)
chr6 (11-129)||(33045422-33045540)
chr6 (12-129)||(10092524-10092641)
chr6 (22-129)||(3065710-3065816)
chr6 (11-129)||(8976416-8976534)
chr6 (600-667)||(30833888-30833955)
chr6 (65-129)||(30908414-30908478)
chr6 (65-129)||(16246714-16246778)
chr6 (665-713)||(30834120-30834168)
chr6 (66-124)||(4660222-4660279)
chr6 (120-163)||(20910749-20910792)
chr6 (120-163)||(20925197-20925240)
[»] scaffold0035 (1 HSPs)
scaffold0035 (11-129)||(35075-35193)
[»] chr8 (13 HSPs)
chr8 (11-129)||(14678012-14678130)
chr8 (11-129)||(31100863-31100981)
chr8 (11-129)||(5657783-5657901)
chr8 (600-713)||(3191588-3191705)
chr8 (11-129)||(27541550-27541667)
chr8 (66-129)||(23738669-23738731)
chr8 (11-118)||(5662589-5662695)
chr8 (66-118)||(24788079-24788131)
chr8 (124-174)||(38684850-38684900)
chr8 (88-129)||(33689362-33689403)
chr8 (177-213)||(34307413-34307449)
chr8 (124-163)||(45239361-45239400)
chr8 (124-174)||(34310328-34310378)
[»] chr7 (6 HSPs)
chr7 (11-129)||(1262100-1262218)
chr7 (11-129)||(43071373-43071491)
chr7 (11-129)||(48849798-48849916)
chr7 (11-129)||(26909972-26910090)
chr7 (65-122)||(22007359-22007416)
chr7 (124-167)||(39262779-39262822)
[»] chr5 (8 HSPs)
chr5 (11-129)||(22009519-22009637)
chr5 (11-129)||(9043814-9043932)
chr5 (11-129)||(30442538-30442656)
chr5 (11-129)||(7473480-7473598)
chr5 (44-129)||(26840988-26841073)
chr5 (65-124)||(19085422-19085481)
chr5 (11-129)||(22004448-22004565)
chr5 (124-165)||(11298471-11298512)
[»] chr2 (6 HSPs)
chr2 (12-124)||(18355305-18355417)
chr2 (11-129)||(23348971-23349089)
chr2 (11-129)||(12741700-12741818)
chr2 (12-129)||(10328884-10329001)
chr2 (11-124)||(1615906-1616018)
chr2 (11-118)||(24454538-24454644)
[»] scaffold0096 (1 HSPs)
scaffold0096 (11-129)||(27422-27539)
[»] scaffold0045 (1 HSPs)
scaffold0045 (11-129)||(11625-11743)
[»] chr4 (3 HSPs)
chr4 (11-129)||(29863352-29863470)
chr4 (66-127)||(24260234-24260294)
chr4 (80-129)||(12506448-12506497)
[»] chr3 (11 HSPs)
chr3 (11-129)||(31685089-31685207)
chr3 (12-129)||(37982361-37982478)
chr3 (11-129)||(19882102-19882220)
chr3 (11-129)||(53973277-53973395)
chr3 (11-118)||(2549960-2550066)
chr3 (11-129)||(12538627-12538744)
chr3 (11-129)||(17681779-17681896)
chr3 (11-118)||(24761889-24761996)
chr3 (11-118)||(24815938-24816045)
chr3 (11-118)||(53352752-53352859)
chr3 (11-118)||(53027743-53027850)
[»] scaffold0596 (1 HSPs)
scaffold0596 (11-124)||(671-784)
[»] chr1 (1 HSPs)
chr1 (65-129)||(50990919-50990983)
[»] scaffold0475 (1 HSPs)
scaffold0475 (66-124)||(7520-7577)
[»] scaffold0157 (1 HSPs)
scaffold0157 (80-129)||(13980-14029)
[»] scaffold0790 (1 HSPs)
scaffold0790 (124-174)||(3951-4001)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 3e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 465 - 597
Target Start/End: Original strand, 30833726 - 30833857
Alignment:
Q  465 tttcggtgaaaaggatgaaaaacactaacatcatgaaaaaataattatgtattgtcttatcagataaaagtagagaagaatacaaatagaaaaacactaa 564  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30833726 tttcggtgaaaaggatgaaaaacac-aacatcatgaaaaaataattatgtattgtcttatcagataaaagtagagaagaatacaaatagaaaaacactaa 30833824  T
Q  565 tattagctttattgcatgcatttttatgagatg 597  Q
    |||||||| ||||||||||||| ||||||||||    
T  30833825 tattagctctattgcatgcattcttatgagatg 30833857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 33045422 - 33045540
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33045422 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 33045521  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  33045522 aatgttaacaaagattaga 33045540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 10092641 - 10092524
Alignment:
Q  12 aaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagca 111  Q
    |||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaaca 10092542  T
Q  112 atgttaacaaagactaga 129  Q
    ||||||||||||| ||||    
T  10092541 atgttaacaaagattaga 10092524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 3065816 - 3065710
Alignment:
Q  22 atacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaa 121  Q
    |||||| |||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3065816 atacatacttagccaaatgatgagatccaacggtctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaa 3065718  T
Q  122 agactaga 129  Q
    ||| ||||    
T  3065717 agattaga 3065710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 8976534 - 8976416
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||| ||||| |||| |||||||||||||  ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||    
T  8976534 caaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaaccatttaggtttagagtttgtaaagtcattagc 8976435  T
Q  111 aatgttaacaaagactaga 129  Q
    ||| |||||||||| ||||    
T  8976434 aatattaacaaagattaga 8976416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 600 - 667
Target Start/End: Original strand, 30833888 - 30833955
Alignment:
Q  600 aagaaataaatgtggtacacaaaatgtctcatagcatcaactacaaaagtgatgagaagaaaggtaag 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30833888 aagaaataaatgtggtacacaaaatgtctcatagcatcaactacaaaagtgatgagaagaaaggtaag 30833955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 30908414 - 30908478
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  30908414 tttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagattaga 30908478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 16246778 - 16246714
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  16246778 tttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattaga 16246714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 665 - 713
Target Start/End: Original strand, 30834120 - 30834168
Alignment:
Q  665 aagagagaaaacttaccgattcctttatcagtttctaaacctcataact 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30834120 aagagagaaaacttaccgattcctttatcagtttctaaacctcataact 30834168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 4660222 - 4660279
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaaga 124  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  4660222 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaaga 4660279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 20910749 - 20910792
Alignment:
Q  120 aaagactagaacgccgacccgtgcgccgaccgggtcttatgagc 163  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  20910749 aaagactagaacgccgacccgtgcgccgcacgggtcttatgagc 20910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 20925197 - 20925240
Alignment:
Q  120 aaagactagaacgccgacccgtgcgccgaccgggtcttatgagc 163  Q
    ||||||||||||||||||||||||||||  ||||||||||||||    
T  20925197 aaagactagaacgccgacccgtgcgccgcacgggtcttatgagc 20925240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 35193 - 35075
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35193 caaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 35094  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  35093 aatgttaacaaagattaga 35075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 7e-51; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 14678012 - 14678130
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14678012 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggttttcaaagtcattagc 14678111  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  14678112 aatgttaacaaagattaga 14678130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 31100863 - 31100981
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    |||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31100863 caaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttaggtttaggatttgcaaagtcattagc 31100962  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  31100963 aatgttaacaaagattaga 31100981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 5657901 - 5657783
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5657901 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttaggtttagggtttgcaaagtcattagc 5657802  T
Q  111 aatgttaacaaagactaga 129  Q
    || ||||||||||| ||||    
T  5657801 aacgttaacaaagattaga 5657783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 600 - 713
Target Start/End: Original strand, 3191588 - 3191705
Alignment:
Q  600 aagaaataaatgtggtacacaaaatgtctcatagcatcaactacaaaagtgatgagaagaaag----gtaagagagaaaacttaccgattcctttatcag 695  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||| |||||||||||||||    
T  3191588 aagaaataaatgtggtacacaaaatgtctcataacatcaactacaaaagtgatgagaagaaaggtaagtaagagagaaaacttatcgattcctttatcag 3191687  T
Q  696 tttctaaacctcataact 713  Q
    ||||||||||||||||||    
T  3191688 tttctaaacctcataact 3191705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 27541550 - 27541667
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  27541550 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgttt-ggagccaaagccatttaggtttagggtttgcaaagtcattagc 27541648  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  27541649 aatgttaacaaagattaga 27541667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 129
Target Start/End: Complemental strand, 23738731 - 23738669
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  23738731 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattaga 23738669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 5662695 - 5662589
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacg-acctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattag 109  Q
    |||||||||||||  |||| |||||||||||||||||| |||| |||||| ||| || || ||| |||  || |||||||||||||||||||||||||||    
T  5662695 caaaggatgagatgaatgcctagccaaatgatgagatctaacggacctcc-ttgatt-ggcgcctaaaaaatctaggtttagggtttgcaaagtcattag 5662598  T
Q  110 caatgttaa 118  Q
    |||| ||||    
T  5662597 caatattaa 5662589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 24788079 - 24788131
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 118  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaa 24788131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 38684900 - 38684850
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagctgaaatctttt 174  Q
    |||||| |||||||||||||||||  |||||||||||||||||||| ||||    
T  38684900 actagatcgccgacccgtgcgccgcacgggtcttatgagctgaaatatttt 38684850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Original strand, 33689362 - 33689403
Alignment:
Q  88 ttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  33689362 ttagggtctgcaaagtcattagcaatgttaacaaagattaga 33689403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 34307449 - 34307413
Alignment:
Q  177 atcattaatctccctgcccaaaactgcactgaactat 213  Q
    ||||||||||||||| |||||||||||||||||||||    
T  34307449 atcattaatctccctacccaaaactgcactgaactat 34307413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 45239361 - 45239400
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagc 163  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  45239361 actagaacgccgacccgtgcgccgcacgggtcttatgagc 45239400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 34310378 - 34310328
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagctgaaatctttt 174  Q
    |||||| | |||||||||||||||  |||||||||||||||||||| ||||    
T  34310378 actagatctccgacccgtgcgccgcacgggtcttatgagctgaaatatttt 34310328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 7e-51; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 1262218 - 1262100
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1262218 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 1262119  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  1262118 aatgttaacaaagattaga 1262100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 43071373 - 43071491
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  43071373 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 43071472  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  43071473 aatgttaacaaagattaga 43071491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 48849798 - 48849916
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48849798 caaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttaggtttaggatttacaaagtcattagc 48849897  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  48849898 aatgttaacaaagattaga 48849916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 26909972 - 26910090
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||||||||||| |||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  26909972 caaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttaggtttagggtttgcaaagttattagc 26910071  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  26910072 aatgttaacaaagattaga 26910090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 22007416 - 22007359
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaa 122  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  22007416 tttggagccaaaaccatttagatttagggtttgtaaagtcattagcaatgttaacaaa 22007359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 167
Target Start/End: Original strand, 39262779 - 39262822
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagctgaa 167  Q
    ||||||||||||||||||||||||  |||||||||| |||||||    
T  39262779 actagaacgccgacccgtgcgccgcacgggtcttataagctgaa 39262822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 7e-51; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 22009519 - 22009637
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22009519 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaaattcattagc 22009618  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  22009619 aatgttaacaaagattaga 22009637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 9043932 - 9043814
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  9043932 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 9043833  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  9043832 aatgttaacaaagattaga 9043814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 30442538 - 30442656
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  30442538 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 30442637  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  30442638 aatgttaacaaagattaga 30442656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 7473480 - 7473598
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7473480 caaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 7473579  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  7473580 aatgttaacaaagattaga 7473598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 26840988 - 26841073
Alignment:
Q  44 agatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  26840988 agatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagattaga 26841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 65 - 124
Target Start/End: Original strand, 19085422 - 19085481
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaaga 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19085422 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaaga 19085481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 22004448 - 22004565
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    |||||||||| ||  ||||| ||||||||||||||||||||||  |  |||||  |||| ||| |||| || ||||||||||||||||||| ||||||||    
T  22004448 caaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttg-attggcgcctaaactatctaggtttagggtttgcaaaatcattagc 22004546  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  22004547 aatgttaacaaagattaga 22004565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 11298471 - 11298512
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagctg 165  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  11298471 actagaacgccgacccgtgcgccgtatgggtcttatgagctg 11298512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 18355305 - 18355417
Alignment:
Q  12 aaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagca 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  18355305 aaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 18355404  T
Q  112 atgttaacaaaga 124  Q
    |||||||||||||    
T  18355405 atgttaacaaaga 18355417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 23348971 - 23349089
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  23348971 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 23349070  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  23349071 aatgttaacaaagattaga 23349089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 12741818 - 12741700
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12741818 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagc 12741719  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  12741718 aatgttaacaaagattaga 12741700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 12 - 129
Target Start/End: Original strand, 10328884 - 10329001
Alignment:
Q  12 aaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagca 111  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||||  |||||||||    
T  10328884 aaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatttcattagca 10328983  T
Q  112 atgttaacaaagactaga 129  Q
    ||||||||||||| ||||    
T  10328984 atgttaacaaagattaga 10329001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 1615906 - 1616018
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||| ||||  | || ||||||||||| |    
T  1615906 caaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttg-tttggagcaaaaaccatttagatttaatggttacaaagtcattaac 1616004  T
Q  111 aatgttaacaaaga 124  Q
    ||||||||||||||    
T  1616005 aatgttaacaaaga 1616018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 24454644 - 24454538
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    |||||||||||||  |||   |||||||||||||||||||||| ||  ||||| ||||| ||| |||  ||||||||||||| ||||||| |   |||||    
T  24454644 caaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttg-tttggcgcctaaaaaatttaggtttaggatttgcaatggtcttagc 24454546  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  24454545 aatgttaa 24454538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 27539 - 27422
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  27539 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattagc 27441  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  27440 aatgttaacaaagattaga 27422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 11625 - 11743
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  11625 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttaggtttagggtttgcaaagtcattagc 11724  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  11725 aatgttaacaaagattaga 11743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 29863352 - 29863470
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  29863352 caaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttacggtttgcaaagtcatgagc 29863451  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  29863452 aatgttaacaaagattaga 29863470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 24260294 - 24260234
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagacta 127  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||    
T  24260294 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagacta 24260234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 12506497 - 12506448
Alignment:
Q  80 atttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  12506497 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattaga 12506448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 31685207 - 31685089
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31685207 caaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 31685108  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||| ||||| ||||    
T  31685107 aatgttaataaagattaga 31685089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 37982478 - 37982361
Alignment:
Q  12 aaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagca 111  Q
    |||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  37982478 aaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaatttcattagca 37982379  T
Q  112 atgttaacaaagactaga 129  Q
    ||||||||||||| ||||    
T  37982378 atgttaacaaagattaga 37982361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 19882102 - 19882220
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||    
T  19882102 caaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaatttcattagc 19882201  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  19882202 aatgttaacaaagattaga 19882220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 53973277 - 53973395
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  53973277 caaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaatttcattagc 53973376  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  53973377 aatgttaacaaagattaga 53973395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 2550066 - 2549960
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2550066 caaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagtcattagc 2549968  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  2549967 aatgttaa 2549960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 12538627 - 12538744
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||     
T  12538627 caaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaga 12538725  T
Q  111 aatgttaacaaagactaga 129  Q
    || ||||||||||| ||||    
T  12538726 aaggttaacaaagattaga 12538744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 17681896 - 17681779
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||||| |    
T  17681896 caaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgttt-ggagccaaaaccatttaggtttagggtttgcaaaatcattaac 17681798  T
Q  111 aatgttaacaaagactaga 129  Q
    |||||||||||||| ||||    
T  17681797 aatgttaacaaagattaga 17681779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 24761889 - 24761996
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||| ||||||||||||||||||||||  |  | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24761889 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24761988  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  24761989 aatgttaa 24761996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 24816045 - 24815938
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||| |||||||||||||||||||||| ||  | | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24816045 caaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 24815946  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  24815945 aatgttaa 24815938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 53352752 - 53352859
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||  || ||||||||||||||||||||||  |  | | ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  53352752 caaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttaggtttagagtttgcaaagtcattagc 53352851  T
Q  111 aatgttaa 118  Q
    ||||||||    
T  53352852 aatgttaa 53352859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 53027743 - 53027850
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| |||||| ||||||||||||||||||||||  |  | |  |||||||| ||||||||||||||||||||||||| ||||| ||||||    
T  53027743 caaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcattttggagtcaaaaccatttaggtttagggtttgtaaagttattagc 53027842  T
Q  111 aatgttaa 118  Q
    | ||||||    
T  53027843 agtgttaa 53027850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 784 - 671
Alignment:
Q  11 caaaggatgagatacatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagc 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||  ||||||||    
T  784 caaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccatttaggtttagggtttgcaatttcattagc 685  T
Q  111 aatgttaacaaaga 124  Q
    ||||||||||||||    
T  684 aatgttaacaaaga 671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 50990983 - 50990919
Alignment:
Q  65 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  50990983 tttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattaga 50990919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 7520 - 7577
Alignment:
Q  66 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaaga 124  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||    
T  7520 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaaga 7577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 13980 - 14029
Alignment:
Q  80 atttaggtttagggtttgcaaagtcattagcaatgttaacaaagactaga 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  13980 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattaga 14029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 4001 - 3951
Alignment:
Q  124 actagaacgccgacccgtgcgccgaccgggtcttatgagctgaaatctttt 174  Q
    |||||| |||||||||||||||||  |||||||||||||||||||| ||||    
T  4001 actagatcgccgacccgtgcgccgcacgggtcttatgagctgaaatatttt 3951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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