View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_low_4 (Length: 493)
Name: NF15132_low_4
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 47385920 - 47385463
Alignment:
| Q |
19 |
acatcctcttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtac |
118 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47385920 |
acatcctcttcttgttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtac |
47385821 |
T |
|
| Q |
119 |
ttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385820 |
ttggtgggacctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtgg |
47385721 |
T |
|
| Q |
219 |
aaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47385720 |
aaaattatggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattt |
47385621 |
T |
|
| Q |
319 |
tctacaatgtcagtgccactctcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagatgaacgtttctgttgaggatgca |
418 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47385620 |
tctacaatgtcagtgccactttcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagaggaacgtttctgttgaggatgca |
47385521 |
T |
|
| Q |
419 |
cataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaag |
476 |
Q |
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| T |
47385520 |
cataggtggttgttgtggtttcttttttccatgtgttttgatatatattatttgaaag |
47385463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 27 - 476
Target Start/End: Original strand, 47373020 - 47373466
Alignment:
| Q |
27 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgaggtacttggtggg |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || || |||||||||||| |
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| T |
47373020 |
ttcttcttccgggtcaaaacttgtagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtggg |
47373119 |
T |
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| Q |
127 |
acctttgtgacttcaattactaacctaccatcttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattat |
226 |
Q |
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||||| ||||||||||| || ||||| |||||| ||||||||| ||||||| ||| ||||||||||||||| || ||||||||||||||||||||||| | |
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| T |
47373120 |
accttagtgacttcaatcaccaaccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattct |
47373219 |
T |
|
| Q |
227 |
ggatttttggtttcttagtagctattaatactggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaat |
326 |
Q |
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| |||| ||||||||||||| ||| ||| || |||||||| |||||| |||||||| |||||||||||||||||| | ||| ||||||||||| |
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| T |
47373220 |
gagttttcactttcttagtagctgctaaaacttgagaacaaggttgtctttg---ctccattgttcccattgaagacaacaataagtcgttttctacaat |
47373316 |
T |
|
| Q |
327 |
gtcagtgccactctcattaccaagattctccgtacataattcaaggctctttggactcatagccaaagatgaacgtttctgttgaggatgcacataggtg |
426 |
Q |
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|||||| |||||||| || |||||||| || || || |||||||| ||||||||||||| | ||||||| |||| ||||| ||||| | | ||||||| |
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| T |
47373317 |
gtcagtaccactctcgttgccaagattttctgtgcacaattcaagactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtg |
47373416 |
T |
|
| Q |
427 |
gttgttgtggtttcttttttccatgtgttttgatatatattatttgaaag |
476 |
Q |
| |
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| |||||||||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
47373417 |
gctgttgtggtttctttttttgatgtgttttgagctatattattggaaag |
47373466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
93 |
tctatcagcttgaaaacatgaggtacttggtgggacctttgtgacttcaattactaacctaccatcttcacg |
164 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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