View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_low_6 (Length: 422)
Name: NF15132_low_6
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_6 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0018 (1 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 31044978 - 31045399
Alignment:
| Q |
1 |
actcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaactgacatgaactataagcaaagagctcagataaa |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31044978 |
actcatgatactacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaactgacatgaactataagcaaagagctcagataaa |
31045077 |
T |
|
| Q |
101 |
gaccataaacagtgtgacatgaatcatcacatgcaaggtatgcagcagtgtatgtaaaggaaaagttgctcttctcctaaagcctcaccaaacgaagttt |
200 |
Q |
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||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
31045078 |
gaccataaacagtctgacatgaatcatctcatgcaaggtattcagcagtgtatgtaaaggaaaagttgctattctcctaaagcctcaccaaacgaagctt |
31045177 |
T |
|
| Q |
201 |
gcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatatagccctc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31045178 |
gcggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaacatgttcatataaccctc |
31045277 |
T |
|
| Q |
301 |
tctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaactctagacttctacaacttcatc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31045278 |
tctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcacaacatacatttaatttaactctagacttctacaacttcatc |
31045377 |
T |
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| Q |
401 |
tatcctctccgcacacttctac |
422 |
Q |
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| T |
31045378 |
tatcctctccgcacacttctac |
31045399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 172412 - 172005
Alignment:
| Q |
1 |
actcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaa---ctgacatgaactataagcaaagagctcagat |
97 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||| || | |||||||||| |||||||||| ||||||||| |
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| T |
172412 |
actcatgatattacaaatcctaaggtaagagtacgaaacctactcgttttgctctcaaaataaatattactgacatgaattataagcaaatagctcagat |
172313 |
T |
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| Q |
98 |
aaagaccataaaca--gtgtgacatgaatcatcacatgcaa--ggtatgca---gcagtgtatgta-aaggaaaa-gttgctcttctcctaaagcctcac |
188 |
Q |
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|||||||||||||| |||||||||||||||||||||| || ||| || | | | || | || |||||||| |||||||||||| ||||||| ||| |
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| T |
172312 |
aaagaccataaacaaagtgtgacatgaatcatcacatgaaacgggtgtgtaaaggaaacgtttctagaaggaaaatgttgctcttctcttaaagccacac |
172213 |
T |
|
| Q |
189 |
caaacgaagtttgc------ggcatataacaagtcttcatcttcacattaaaaactttttgtatatgtaaattaagattcaaaatttaaactcatgcaaa |
282 |
Q |
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||||||||| ||| | |||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||||||||| |
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| T |
172212 |
caaacgaagcttgattagaagatatataacaggtcttcatcttcacattaaaaacattttgtatatgtaaattaag-ttcaaaattcaatctcatgcaaa |
172114 |
T |
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| Q |
283 |
catgttcatatagccctctctttctctaaaattccattgaattatgagtacatattttatccgtatccaattgtcaca-acatacatttaatttaactct |
381 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
172113 |
catgttcatataatcctctctttctctgaaattccattgaattattagtacatatttcatccgtatccaattgtcacacacattcatttaattaaactct |
172014 |
T |
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| Q |
382 |
agacttcta |
390 |
Q |
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| ||||||| |
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| T |
172013 |
acacttcta |
172005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 18352 - 18287
Alignment:
| Q |
1 |
actcatgatattacaaaccctatggtaagagtacgaaacctactcgttttgcgttcaaaatcaaaa |
66 |
Q |
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|||||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
18352 |
actcatgatattgcaaaccctttggttagagtacgaaacctactcgttttgctttcaaaatcaaaa |
18287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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