View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_low_8 (Length: 386)
Name: NF15132_low_8
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 18067291 - 18067184
Alignment:
| Q |
7 |
aatacaaagcaaaagaggtgaactacgtcattatgttgtatgaataaatttctaatcaattgaatcaatatatgttgaattttaaattctaatatataga |
106 |
Q |
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| T |
18067291 |
aatacaaagcaagagaggtgaactacgtcattatgttgtatgaataaatttttaatcaattgaatcaacatatgttgaattttaaattctaatatataga |
18067192 |
T |
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| Q |
107 |
aagaagaa |
114 |
Q |
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| T |
18067191 |
aagaagaa |
18067184 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 18067067 - 18067001
Alignment:
| Q |
265 |
aattatgtggtcgctagcatgtgctcctttttcaattaatttctcacaacttaatttaatctttgtt |
331 |
Q |
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| T |
18067067 |
aattatgtggtcgctagcatgtgctcctttttcaattaatttctcacaacttaatttaatctttgtt |
18067001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 331
Target Start/End: Complemental strand, 18130342 - 18130276
Alignment:
| Q |
265 |
aattatgtggtcgctagcatgtgctcctttttcaattaatttctcacaacttaatttaatctttgtt |
331 |
Q |
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| T |
18130342 |
aattatgtggtcgctagcatgtgctcctttttcaattaatttctcacaacttaatttaatctttgtt |
18130276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 18068520 - 18068442
Alignment:
| Q |
20 |
agaggtgaactacgtcattatgttgtatgaataaatttctaatcaattgaatcaatatatgttgaattttaaattctaa |
98 |
Q |
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|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
18068520 |
agagttgaactacatcattatattgtatgaataaatttctaatcaattgaatcaatatatgttgacttataaattctaa |
18068442 |
T |
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