View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15132_low_9 (Length: 376)
Name: NF15132_low_9
Description: NF15132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15132_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 42686248 - 42685894
Alignment:
| Q |
6 |
agcagcagagacatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaaaaaccattatcaaagtcatcct |
105 |
Q |
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| T |
42686248 |
agcagcagaggcatggtttgtgttaagaatagcatttacttcagcatgacaaacataactagaataggaagaacagaaaaaccattatcaaagtcatcct |
42686149 |
T |
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| Q |
106 |
gattaattaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtacttggtctccaaaggattccc |
205 |
Q |
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| T |
42686148 |
tattaatgaaaagacttgagcgagaacatgattaaggttacaacaagagtgaaatatgatttgaaaacactcacgggtacttggtctccaaaggattccc |
42686049 |
T |
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| Q |
206 |
ggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaactcctgccttaaacactt |
305 |
Q |
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| T |
42686048 |
ggtcctagatttctgaaacatataaatagatttatcaatcaatgagaaattttaaatgatagcaaaagaaaaataactcaaactcctgccttaaacactt |
42685949 |
T |
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| Q |
306 |
aacttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataac |
360 |
Q |
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| T |
42685948 |
accttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataac |
42685894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 27119470 - 27119424
Alignment:
| Q |
17 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
63 |
Q |
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| T |
27119470 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
27119424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 21185787 - 21185735
Alignment:
| Q |
308 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataac |
360 |
Q |
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| T |
21185787 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataac |
21185735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 27119385 - 27119333
Alignment:
| Q |
308 |
cttggcccatggtagcttgtcatcagaacaacctcttggaaatccattataac |
360 |
Q |
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| T |
27119385 |
cttggcccatggtaacttgtcatcagaacaacctcttggaaattcattataac |
27119333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 21185872 - 21185826
Alignment:
| Q |
17 |
catggtttgtgttaagaatagcatttacttcagcatgacaaacataa |
63 |
Q |
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| T |
21185872 |
catggtttgtgttaagaatagcatttacttcagcatgacagacataa |
21185826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 27119423 - 27119384
Alignment:
| Q |
180 |
gggtacttggtctccaaaggattcccggtcctagatttct |
219 |
Q |
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| T |
27119423 |
gggtacttagtctccaaaggattcccagtcctagatttct |
27119384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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