View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_high_18 (Length: 316)
Name: NF15133_high_18
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 40644876 - 40644587
Alignment:
| Q |
18 |
atatacaaaggcagtgttaacatactccaaacgcggaatcttccttaaatctgtgagctttttctgtacgctctttgcactgattagcttttcttttctg |
117 |
Q |
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| T |
40644876 |
atatacaaaggcagtgttaacatactccaaacgcggaatcttccttaaatctgtgagctttttctgtacgctctttgcactgattagcttttcttttctg |
40644777 |
T |
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| Q |
118 |
atatataaaggagacgtaaaccaacatgacctacacttaaattatgaccacattatcaccattttgctttttactggagctattattttggagatatatg |
217 |
Q |
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| T |
40644776 |
atatataaaggagacgtaaaccaacatgacctacacttaaattatgaccacattatcaccattttgctttttactggggctattattttggagatatatg |
40644677 |
T |
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| Q |
218 |
cagtcattgttttactttcttcaagtcgggcaatgttttggttcagcaaccataatagtcggagaattaatcttctccacaaattcatct |
307 |
Q |
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| T |
40644676 |
cagtcattgttttactttcttcaagtcgggcaatgttttggttcagcaaccataatagtcggagaattcatcttctctacaaattcatct |
40644587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 40653558 - 40653480
Alignment:
| Q |
18 |
atatacaaaggcagtgttaacatactccaaacgcggaatcttccttaaatctgtgagctttttctgtacgctctttgca |
96 |
Q |
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| T |
40653558 |
atatacaaaggcagtgataacatattcctaccgcggcatcttcctgaaatctgtgagctttttctgtacactctctgca |
40653480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 40653359 - 40653315
Alignment:
| Q |
208 |
gagatatatgcagtcattgttttactttcttcaagtcgggcaatg |
252 |
Q |
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| T |
40653359 |
gagatatatgcagtcattgttttactttcttcaagttgggtaatg |
40653315 |
T |
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