View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_high_5 (Length: 559)
Name: NF15133_high_5
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Complemental strand, 8460575 - 8460023
Alignment:
| Q |
9 |
gaagaaaatcatcattttctgtccaagattgaaagtccaccatagtaggtctagctggagtatgagaacaccaaggtgcatcattttgagactgcacatt |
108 |
Q |
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| T |
8460575 |
gaagcaaatcatcattttctgtccaagattgaaagtccaccatagtaggtctagctggagtatgagaacaccaaggtgcatcattttgagactgcacatt |
8460476 |
T |
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| Q |
109 |
acttaaagcctaccggagattctttctcttcaagtaaccagttgaatcataaatagctgatataaagagctctttgtcattaataaaaatagaaaaggaa |
208 |
Q |
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| T |
8460475 |
acttaaagcctacag-agattctttctcttcaagtaaccagttgaatcataaatagctgatataaagagctctttgtcattaataaaaatagaaaaggaa |
8460377 |
T |
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| Q |
209 |
agatatcgataatcaatgacatatttgtttacttttactttcatcaaatgcaatttaaggtctctctcaatttatcgata-------------------- |
288 |
Q |
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| T |
8460376 |
agatatcgataatcgatgacatatttgtttacttttactttcatcaaatgaaatttaaggtc--tctcaatttatcgagaaggaaactcttgtgttgaca |
8460279 |
T |
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| Q |
289 |
-attggattcttttgaggttttttctcaaaccttcacatggtagaattcaattcctgcttttattagctcggactttttccgccaatgttgtttttactt |
387 |
Q |
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| T |
8460278 |
tattggattcttttgaggttttttctcaaaccttcacatggtaggattcaattcctgcttttattagctcggactttttccgccaatgttgtttttactt |
8460179 |
T |
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| Q |
388 |
ttctaggctaggtttatgtctctccaaaatatttgtttttctttttcgttcgatggtgtcaatctaggatgattgatcctctctaatgcttcttacttta |
487 |
Q |
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| T |
8460178 |
ttctaggctaggtttatgtctctccaaaatatttgtttttctttttcgttcaatggtgtcaatctaggatgattgatcctctctaatgcttcttgcttta |
8460079 |
T |
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| Q |
488 |
aaaaactcaaatgtaaaaactcatgtaatgacacaacaattctacattcaaccttc |
543 |
Q |
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| T |
8460078 |
aaaaactcaaatgtaaaaactcatgcaatgacacaacaattctacattcaaccttc |
8460023 |
T |
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