View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_high_7 (Length: 515)
Name: NF15133_high_7
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_high_7 |
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| [»] chr2 (2 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 217 - 515
Target Start/End: Original strand, 21428059 - 21428360
Alignment:
| Q |
217 |
acccataagtttcaaacgtctcactgcaagatatgcaatagaaattatttcacatctttccttacttcg---ataagaattgtggcttctaaaatctgtg |
313 |
Q |
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| T |
21428059 |
acccataagtttcaaacgtctcactgcaagacatgcaatagaaattatttcacatctttccttacttcttccataagaattgtggcttctaaaatctgtg |
21428158 |
T |
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| Q |
314 |
agacttggatgtccgtaaaatcttttcttactgtcaaactgttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgc |
413 |
Q |
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| T |
21428159 |
agacttggatgtccgtaaaatcttttcttactgtcaaactgttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgc |
21428258 |
T |
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| Q |
414 |
cataaccctcttgactgaggaacctattctcgttgtagatatctgttgctctttgcagctctatttctgtaaaaagctttgctatttctccgtttccata |
513 |
Q |
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| T |
21428259 |
cataaccctcttgactgaggaacctattctcgttgtagatatctgctgctctttgcagctctatttctgtaaaaagctttgctatttctccgtttccata |
21428358 |
T |
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| Q |
514 |
ag |
515 |
Q |
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|| |
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| T |
21428359 |
ag |
21428360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 21427860 - 21427986
Alignment:
| Q |
18 |
gtatgctcaaatgattatcctttaattggtgacttttannnnnnngaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtgg |
117 |
Q |
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| T |
21427860 |
gtatgttcaaatgattatcctttaattggtgacttttttttttttgaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtgg |
21427959 |
T |
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| Q |
118 |
ccgagacaaggatacaataaggtgcgc |
144 |
Q |
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| T |
21427960 |
ccgagacaaggatacaataaggtgcgc |
21427986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 28110678 - 28110759
Alignment:
| Q |
63 |
gaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtggccgagacaaggatacaataaggtgcgc |
144 |
Q |
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| T |
28110678 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaaggatacaaaaaggtgcgc |
28110759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 27844258 - 27844220
Alignment:
| Q |
72 |
aaatattattcgcgtcgagaatgtgcaagacgcacaaaa |
110 |
Q |
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| T |
27844258 |
aaatattattcacgtcgagaatgtgcaagacgcacaaaa |
27844220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 355 - 515
Target Start/End: Complemental strand, 30105828 - 30105668
Alignment:
| Q |
355 |
ttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgccataaccctcttgactgaggaacctattctcgttgtagata |
454 |
Q |
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| T |
30105828 |
ttttgactttttaactgcaactatggttccatctggtaacattcctttgtacaccgtgccatagccaccttgaccaagaaatctactccggttgtagtta |
30105729 |
T |
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| Q |
455 |
tctgttgctctttgcagctctatttctgtaaaaagctttgctatttctccgtttccataag |
515 |
Q |
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| T |
30105728 |
tctgttgctctttgcagctcttctgccgtaaaaagctttgccatttctccatttccataag |
30105668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 344 - 513
Target Start/End: Complemental strand, 30115930 - 30115761
Alignment:
| Q |
344 |
ctgtcaaactgttttgactttttaactgtgattatggttccatccggcgacgttcctttgtacaccatgccataaccctcttgactgaggaacctattct |
443 |
Q |
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| T |
30115930 |
ctgtcaaggtgttttgactttttaactgcgactatggttccatctggtagcattcctttgtacactgtgccatagccgccttgaccaagaaacctacttt |
30115831 |
T |
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| Q |
444 |
cgttgtagatatctgttgctctttgcagctctatttctgtaaaaagctttgctatttctccgtttccata |
513 |
Q |
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| T |
30115830 |
ggttgtagtcatctgttgctctttggagctcctctgctgtaaaaagctttgccatttctccatttccata |
30115761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 35052093 - 35052138
Alignment:
| Q |
65 |
aacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaa |
110 |
Q |
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| T |
35052093 |
aacagcaaaattttattctcgtcgagattgtgcgagacgcacaaaa |
35052138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 63 - 144
Target Start/End: Complemental strand, 24837555 - 24837474
Alignment:
| Q |
63 |
gaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtggccgagacaaggatacaataaggtgcgc |
144 |
Q |
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| T |
24837555 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggccgagacaaggaaacaaaaaggtgcgc |
24837474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 6516235 - 6516314
Alignment:
| Q |
63 |
gaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtggccgagacaaggatacaataaggtgc |
142 |
Q |
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| T |
6516235 |
gaaactgcgaaatattattcacgttgagaatgtgcaagacgcacaaaactcgcggcagagacaaggatacaataaggtgc |
6516314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 36532202 - 36532146
Alignment:
| Q |
63 |
gaaacagcaaaatattattcgcgtcgagaatgtgcaagacgcacaaaactcgtggcc |
119 |
Q |
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| T |
36532202 |
gaaactgcgaaatattattcacgtcgagaatgtgcaagacgcacaaaactcgcggcc |
36532146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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