View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_high_9 (Length: 456)
Name: NF15133_high_9
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 44956487 - 44956043
Alignment:
| Q |
1 |
tgatcatacacatcttcacctggtttcccaccactgttattctattgaaatattcaaagatattctcatttagttccatttgcaaaagctcaaattgtca |
100 |
Q |
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| T |
44956487 |
tgatcatacacatcttcacctggtttcccaccactgttattctattgaaatattcaaagatattctcatttagttccatttgcaaaagctcaaattgtca |
44956388 |
T |
|
| Q |
101 |
tcacattgtttgcaattgtaccttcttgaatcttgagttgtcatcaccaacatgactttctctagaactttctaggcttctttgtatgtggttgcattct |
200 |
Q |
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| T |
44956387 |
tcacattgtttgcaattgtaccttcttgaatcttgagttgtcatcaccaacatgactttctctagaactttctaggcttctttgtatgtggttgcattct |
44956288 |
T |
|
| Q |
201 |
caatatttttgaaattgatggaggaagtgtgaaacagttaggaaatggaatttaaaaaacgataaactgcactaacttctatcaatggatatgtcactta |
300 |
Q |
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| T |
44956287 |
caatatttttgaaattgatggaggaagtgtgaaacagttaggaaatggaatttaaaaaacgataaactgcactaacttctatcaatggatatctcactta |
44956188 |
T |
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| Q |
301 |
tttacacacttgtgcacttcatatggatttggtcttacataacaaactaggtccaatgcacatcatacaatccacaactaactaattctctaactaacac |
400 |
Q |
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| T |
44956187 |
tttacacacttgtgcacttcatatggatttggtcttacataacaaactaggtccaatgcacatcatacaatccacaactaactaattctctaactaacac |
44956088 |
T |
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| Q |
401 |
aattaaaattgatttatacttcactcataacaggatattcttcga |
445 |
Q |
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| T |
44956087 |
aattaaaattgatttatacttcactcataacagggttttcttcga |
44956043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 4309819 - 4309770
Alignment:
| Q |
48 |
aaatattcaaagatattctcatttagttccatttgcaaaagctcaaattg |
97 |
Q |
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| T |
4309819 |
aaatattcaaaaatattttcatttggttccatttgcaaaagttcatattg |
4309770 |
T |
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