View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_12 (Length: 411)
Name: NF15133_low_12
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 33095913 - 33096271
Alignment:
| Q |
31 |
gtaactaaattcataacaatgcttctgttacaataatcttctcttcaatttcaatccatgacaaaactcatgatcatcgcaacgatccaattgtacctgc |
130 |
Q |
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| T |
33095913 |
gtaactaaattcataacaatgcttctgttacaataatcttctcttcaatttcaatccatgacgaaactcatgatcatcgcaacgatccaattgtacctgc |
33096012 |
T |
|
| Q |
131 |
aacgagaacacttcaactatagattgatgaacatgaagaaactccaaaagcaatataaataagaagatcacacctccttgaaatgatagatctggcaaat |
230 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
33096013 |
aacgagaacacttcaacta--gattgatgaacatgaagaaactccaaaagcaatataaataagaagatcacgcctccttgaaatgatagatctgggaaat |
33096110 |
T |
|
| Q |
231 |
cgaatttcagacctacaaaaaaggatgcatatgaaaatgaaattagaacaatcacgaaggtgattaaagaaaaataatcaacaaaggtaagattaatcat |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33096111 |
tgaatttcagacctacaaaaaaggatgcatatgaaaatgaaattagaacaatcacgaaggtgattaaagaaaaataatcaacaaa-gtaagattaatcat |
33096209 |
T |
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| Q |
331 |
accatggaaaattaaccattggtgtgtttatcatgaactgatccatctggaagagtttgtag |
392 |
Q |
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| T |
33096210 |
accatggaaaattaaccattgttgtgtttatcatgaactgatccatctggaagagtttgtag |
33096271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 203 - 389
Target Start/End: Original strand, 33081516 - 33081703
Alignment:
| Q |
203 |
cctccttgaaatgatagatctggcaaatcgaatttcagacctacaaaaaaggatgcatatgaaaatgaaattagaacaatcacgaaggtgattaaagaaa |
302 |
Q |
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|||||| | ||||||||||||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33081516 |
cctcctcgcaatgatagatctggcaaatcgaacttcagacctagaaaaaatgatgcaaatgaaaatgaaattagaacaatcacaaaggtgattaaagaaa |
33081615 |
T |
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| Q |
303 |
aataatcaacaaaggtaagattaatcataccatggaaaa-ttaaccattggtgtgtttatcatgaactgatccatctggaagagtttg |
389 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||||| | ||||| ||| ||||||||| ||| ||||||| |||| |
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| T |
33081616 |
aataatcaacaaagttaagattaatcataccatggaaaatttaaccatcgatgtgtagatcttgaactgattcatgtggaagaatttg |
33081703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 34 - 140
Target Start/End: Original strand, 33081375 - 33081480
Alignment:
| Q |
34 |
actaaattcataacaatgcttctgttacaataatcttctcttcaatttcaatccatgacaaaactcatgatcatcgcaacgatccaattgtacctgcaac |
133 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||||||||| |
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| T |
33081375 |
actaaattcataacaacgcttttgttacaataatcttctcttcaatttcaatccatg-cgaaactcgcgatcatcacaatgatccaattgtacctgcaac |
33081473 |
T |
|
| Q |
134 |
gagaaca |
140 |
Q |
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||||||| |
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|
| T |
33081474 |
gagaaca |
33081480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 178; Significance: 7e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 37 - 357
Target Start/End: Original strand, 22765547 - 22765865
Alignment:
| Q |
37 |
aaattcataacaatgcttctgttacaataatcttctcttcaatttcaatccatgacaaaactcatgatcatcgcaacgatccaattgtacctgcaacgag |
136 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||| |
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| T |
22765547 |
aaattcataacaacacttctgttacaataatcttctcttcaatttcaatccatgacaaaaatcgcaatcattgcaacaatccaattgtacctgcaacgag |
22765646 |
T |
|
| Q |
137 |
aacacttcaactatagattgatgaacatgaagaaactccaaaagcaatataaataagaagatcacacctccttgaaatgatagatctggcaaatcgaatt |
236 |
Q |
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|||||||||| || | |||||||||||||| ||||||| || | |||||||||||||||||| | ||| || | |||||||||| ||| |||| ||| | |
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| T |
22765647 |
aacacttcaatta--ggttgatgaacatgaaaaaactccgaatgaaatataaataagaagatcgcgcctactcgcaatgatagatttgggaaatggaact |
22765744 |
T |
|
| Q |
237 |
tcagacctacaaaaaaggatgcatatgaaaatgaaattagaacaatcacgaaggtgattaaagaaaaataatcaacaaaggtaagattaatcataccatg |
336 |
Q |
| |
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|||| ||||||||||| |||||| |||||||||||||||||||||| || || |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22765745 |
tcagccctacaaaaaatgatgcagatgaaaatgaaattagaacaattgtgatggagattaaagaaaaataatcaacaaaggtacgattaatcataccatg |
22765844 |
T |
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| Q |
337 |
gaaaattaaccattggtgtgt |
357 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
22765845 |
gaaaattaaccatcggtgtgt |
22765865 |
T |
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