View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15133_low_13 (Length: 400)

Name: NF15133_low_13
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15133_low_13
NF15133_low_13
[»] chr5 (4 HSPs)
chr5 (126-400)||(23226409-23226667)
chr5 (10-55)||(23226736-23226781)
chr5 (126-179)||(18707267-18707321)
chr5 (10-55)||(15858147-15858192)
[»] chr4 (5 HSPs)
chr4 (10-55)||(18635968-18636013)
chr4 (20-55)||(45801346-45801381)
chr4 (126-179)||(18568028-18568082)
chr4 (10-55)||(23962988-23963033)
chr4 (10-55)||(26886738-26886783)
[»] chr7 (3 HSPs)
chr7 (20-55)||(34287644-34287679)
chr7 (20-55)||(45867573-45867608)
chr7 (15-55)||(16861016-16861056)
[»] chr3 (3 HSPs)
chr3 (17-55)||(18461768-18461806)
chr3 (10-55)||(2397927-2397972)
chr3 (10-55)||(28843873-28843918)
[»] chr1 (2 HSPs)
chr1 (126-179)||(4694940-4694994)
chr1 (10-55)||(48524632-48524677)
[»] chr8 (1 HSPs)
chr8 (10-55)||(12649621-12649666)
[»] chr2 (1 HSPs)
chr2 (10-55)||(18508596-18508641)
[»] scaffold0024 (1 HSPs)
scaffold0024 (128-179)||(88665-88717)
[»] chr6 (1 HSPs)
chr6 (126-179)||(8129536-8129591)


Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 126 - 400
Target Start/End: Complemental strand, 23226667 - 23226409
Alignment:
Q  126 gataaaagactaaagtgttatctgaaattaagtaaagaattaaaagtgtaatttaacatattatttattactcctactatcccaaattatgaacaaacta 225  Q
    |||||||||  ||||| |||| ||||||||| ||| | |||||||| ||||||||||||||||||||||||||| |||||||||||||| | |           
T  23226667 gataaaagatcaaagtattatatgaaattaaataagggattaaaagagtaatttaacatattatttattactcccactatcccaaattaggca------- 23226575  T
Q  226 taatttaagacaannnnnnnctctgacttataattgtataattaattactactactaattggtagactttatannnnnnnggaaagtttgaatttaaagg 325  Q
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  23226574 -------agacaatttttttctctgacttataattgtataattaattactactactaattggtagactttatatttttttggaaagtttgaatttaaagg 23226482  T
Q  326 ttaaacattgaaagtttgagaaacacgaatacttggtaaattaaagtattctctcattttcatgctatgagacat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||    
T  23226481 ttaaacattgaaagtttgagaaacacgaatacttggtaaattaaagtat--tctcactttcatgctatgagacat 23226409  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 23226781 - 23226736
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  23226781 agatgaagaccatagatttaaagattgaaaggtcataagaaaataa 23226736  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 18707321 - 18707267
Alignment:
Q  126 gataaaagactaaagtgttatctgaaattaag-taaagaattaaaagtgtaattt 179  Q
    |||||||||| ||| ||||| ||||||||||| ||||| ||||||||||||||||    
T  18707321 gataaaagaccaaactgttacctgaaattaagttaaaggattaaaagtgtaattt 18707267  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 15858147 - 15858192
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||| |||| |||||||||||||||||||| |||||| ||||||||    
T  15858147 agataaagatcatagatttaaagattgaaatatcatacgaaaataa 15858192  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 18636013 - 18635968
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  18636013 agatgaagaccatggatttgaagattgaaaggtcataagaaaataa 18635968  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 45801381 - 45801346
Alignment:
Q  20 catagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45801381 catagatttgaagattgaaagatcataagaaaataa 45801346  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 18568082 - 18568028
Alignment:
Q  126 gataaaagactaaagtgttatctgaaattaagtaaaga-attaaaagtgtaattt 179  Q
    |||||| ||| ||| |||||||||||||||||| |||| ||||||||||||||||    
T  18568082 gataaaggaccaaactgttatctgaaattaagttaagagattaaaagtgtaattt 18568028  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 23962988 - 23963033
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||| ||||||||||| ||||||||||  ||||||||||||||    
T  23962988 agatgaaaaccatagatttgaagattgaaatgtcataagaaaataa 23963033  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 26886783 - 26886738
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  26886783 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 26886738  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 34287679 - 34287644
Alignment:
Q  20 catagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  34287679 catagatttgaagattgaaagatcataagaaaataa 34287644  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 20 - 55
Target Start/End: Complemental strand, 45867608 - 45867573
Alignment:
Q  20 catagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||| ||||||||||||||||||||||||||    
T  45867608 catagatttgaagattgaaagatcataagaaaataa 45867573  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 16861016 - 16861056
Alignment:
Q  15 aagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||| |||||||||||||| ||||||| |||||||||||||    
T  16861016 aagatcatagatttaaagactgaaagaccataagaaaataa 16861056  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 18461768 - 18461806
Alignment:
Q  17 gaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  18461768 gaccatagatttaaagactgaaagaccataagaaaataa 18461806  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 2397927 - 2397972
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||||||||||||| |||| ||||||||||  ||||||||||||||    
T  2397927 agatgaagaccataaatttgaagattgaaatgtcataagaaaataa 2397972  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 28843873 - 28843918
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  28843873 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 28843918  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 4694994 - 4694940
Alignment:
Q  126 gataaaagactaaagtgttatctgaaattaagtaaaga-attaaaagtgtaattt 179  Q
    |||||||||||||| |||||||||||||||| | |||| | ||||||||||||||    
T  4694994 gataaaagactaaactgttatctgaaattaaattaagagactaaaagtgtaattt 4694940  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 48524632 - 48524677
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||||| || ||||||||| |||||||||||| |||||||||||||    
T  48524632 agatgaggatcatagatttgaagattgaaagaccataagaaaataa 48524677  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 12649621 - 12649666
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    ||||| |||||| | ||||||||||||||||| |||||||||||||    
T  12649621 agatggagaccacatatttaaagattgaaagaccataagaaaataa 12649666  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 18508596 - 18508641
Alignment:
Q  10 agatgaagaccatagatttaaagattgaaagatcataagaaaataa 55  Q
    |||||||| ||||||||||||||||  |||| ||||||||||||||    
T  18508596 agatgaaggccatagatttaaagatgaaaaggtcataagaaaataa 18508641  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 88665 - 88717
Alignment:
Q  128 taaaagactaaagtgttatctgaaattaagt-aaagaattaaaagtgtaattt 179  Q
    |||| |||||||  ||||||||||||||||| || ||||||||||||||||||    
T  88665 taaaggactaaatcgttatctgaaattaagtcaaggaattaaaagtgtaattt 88717  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 8129591 - 8129536
Alignment:
Q  126 gataaaagactaaagtgttatctgaaattaagt--aaagaattaaaagtgtaattt 179  Q
    |||||| ||| ||| ||||||||||||||||||  ||||| |||||||||||||||    
T  8129591 gataaaggaccaaactgttatctgaaattaagttaaaagacttaaaagtgtaattt 8129536  T

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