View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_14 (Length: 391)
Name: NF15133_low_14
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 46 - 314
Target Start/End: Complemental strand, 27154997 - 27154729
Alignment:
| Q |
46 |
tgtcaaagaaaactagaggtggaggttctaatagaacttcacccattaagaaggttgttcaagagcctctgcacaagtcaaggagacctacaaggaagtt |
145 |
Q |
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| T |
27154997 |
tgtcaaagaaaactagaggtggaggttctgatagaacttcaccagttaagaaggttgttcaagagcctctgcacaagtcaaggagacctacaaggaagtt |
27154898 |
T |
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| Q |
146 |
gaagttgtcttccgaagcttcagaagctgtaacaagtgaaggtggaagatctatcgctcaatttgtggaagataagtatgtgaaagctgttaagaagatg |
245 |
Q |
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| T |
27154897 |
gaagttgtcttccgaagcttcagaagctgtaacaagtgaaggtggaagatccatcgctcagtttgtggaagataagtatgtgaaagttgttaagaaggtg |
27154798 |
T |
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| Q |
246 |
ttggagctatctaaggatttggagcagccaacagtgagtcaagctagtgaggtcctgaagactcacatg |
314 |
Q |
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| T |
27154797 |
ttcgacctgtctaaggatttggagcagccaacaatgggtcaagctagtgaggtcctgaagactcacatg |
27154729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 166 - 314
Target Start/End: Complemental strand, 27113084 - 27112936
Alignment:
| Q |
166 |
cagaagctgtaacaagtgaaggtggaagatctatcgctcaatttgtggaagataagtatgtgaaagctgttaagaagatgttggagctatctaaggattt |
265 |
Q |
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| T |
27113084 |
cagaagctgtaacaagtgaaggtggaagatccatcgctcagtttgtggaagataagtatgtgaaagttgttaagaaggtgttcgacctgtctaaggattt |
27112985 |
T |
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| Q |
266 |
ggagcagccaacagtgagtcaagctagtgaggtcctgaagactcacatg |
314 |
Q |
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| T |
27112984 |
ggagcagccaacaatgggtcaagctagtgaggtcctgaagactcacatg |
27112936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 15554523 - 15554464
Alignment:
| Q |
285 |
caagctagtgaggtcctgaagactcacatgaaggttaaattggaacaaggtacttcagaa |
344 |
Q |
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| T |
15554523 |
caagctagtgaggtccttaagactcacatgaaggttaaattggaacaaggttattcagaa |
15554464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 15650129 - 15650079
Alignment:
| Q |
285 |
caagctagtgaggtcctgaagactcacatgaaggttaaattggaacaaggt |
335 |
Q |
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| T |
15650129 |
caagctagtgaggtccttaagactcacatgaaggttaaattggaacaaggt |
15650079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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