View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15133_low_17 (Length: 355)
Name: NF15133_low_17
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 39313959 - 39313629
Alignment:
| Q |
13 |
aaaataactcatgtgcaactttaagaagcacaaatgcagcatgtaagcaaaattgatggccctcgagccgattgaatcaactccagataatttctaagaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39313959 |
aaaataactcatgtgcaactttaagaagcacaaatgcagcatgtaagcaaaattgatggccttcgagccgattgaatcaactccagataatttctaagaa |
39313860 |
T |
|
| Q |
113 |
accggtcaatctacaaaacttttctaagagcaatgtcgatgaatcatctactcggaagcccttttttaaatgtaaaagtacagacaaatttgacttgt-- |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39313859 |
accggtcaatctacaaaacttttctaagagcaatgtcgatgaatcatctactcggaagcccttttttaaatgtaaaagtacagacaaatttgacttgtta |
39313760 |
T |
|
| Q |
211 |
tatacatcagtgtctttcaaaataccagatagaaatatttgctgatctttactcagcccaaagaatcacttcctcaaagtttcaacattttctaaaacag |
310 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39313759 |
tatacatcagtgtgtttcaaaataccagatagaaatatttgctgatctttactcagcccaaagaatcacttcctcaaagtttcaacattttctaaaacag |
39313660 |
T |
|
| Q |
311 |
atttagaatatgctgaaagatagatgttagt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
39313659 |
atttagaatatgctgaaagatagatgttagt |
39313629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 171 - 341
Target Start/End: Complemental strand, 39297623 - 39297451
Alignment:
| Q |
171 |
cccttttttaaatgtaaaagtacagacaaatttgacttgttata--catcagtgtctttcaaaataccagatagaaatatttgctgatctttactcagcc |
268 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
39297623 |
ccctattttaaatgtgaaagtacagatgaatttgacttgttatatacatcagtgtgttttaaaataccagatagcaatatttgttgatctttactcagcc |
39297524 |
T |
|
| Q |
269 |
caaagaatcacttcctcaaagtttcaacattttctaaaacagatttagaatatgctgaaagatagatgttagt |
341 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
39297523 |
caaagaaccacttcctcaaagtttcaacattgtctaaaacagacttagaatatgctgaaagatagatgttagt |
39297451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 17345201 - 17345506
Alignment:
| Q |
21 |
tcatgtgcaactttaagaagcacaaatgcagcatgtaagcaaaattgatggccctcgagccgattgaatcaactccagataatttctaagaaaccggtca |
120 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||| |||||| ||||||| ||||||| || |
|
|
| T |
17345201 |
tcatgtgcaaatttaagaagcacaaatgcagcatgtaagccaaattgaaggctctcgagccaattgaatcatctccagttaatttccaagaaacttgttg |
17345300 |
T |
|
| Q |
121 |
atctacaaaacttttctaagagcaatgtcgatgaatcatctactcggaagcccttttttaaatgtaaaagtacagacaaatttgacttgtta--tacatc |
218 |
Q |
| |
|
||||||||| | |||| ||| ||| ||||| | |||| |||||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
17345301 |
atctacaaatttattctgagatcaa-----------------ctcgggaaccctgttttaaatgtgaaagtacagaaaaatttgacttgttacatacatc |
17345383 |
T |
|
| Q |
219 |
agtgtctttcaaaataccagatagaaatatttgctgatctttactcagcccaaagaatcacttcctcaaagtttcaacattttctaaaacagatttagaa |
318 |
Q |
| |
|
|||| || |||||||| || || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
17345384 |
ggtgtgctttaaaatacccgaaagcaatatttgttgatctttactcagcccaaagaaccacttcctcaaagtttcaacattgtctaaaacagacttagaa |
17345483 |
T |
|
| Q |
319 |
tatgctgaaagatagatgttagt |
341 |
Q |
| |
|
|||| ||||| |||||||||||| |
|
|
| T |
17345484 |
tatgttgaaatatagatgttagt |
17345506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University