View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15133_low_18 (Length: 345)
Name: NF15133_low_18
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_18 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0074 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 47133 - 47471
Alignment:
| Q |
1 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47133 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
47232 |
T |
|
| Q |
101 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47233 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
47332 |
T |
|
| Q |
201 |
ctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47333 |
ctgattctgtctatggattgttcatgtgcaggggtgatgtctcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
47432 |
T |
|
| Q |
301 |
cccattatccaaagaagctattatttggtatgacaattg |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47433 |
cccattatccaaagaagctattatttggtatgacaattg |
47471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 20086844 - 20086541
Alignment:
| Q |
1 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||| ||||||| ||||||| ||||||| |
|
|
| T |
20086844 |
ctcaatccttattcgattcctttgttttgcaactatcaaggcacaggactctattt---------------gttcctccaatgggaccacaaccaatagc |
20086760 |
T |
|
| Q |
101 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20086759 |
acctaccaaatcaataccaggacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggagaccact |
20086660 |
T |
|
| Q |
201 |
ctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
20086659 |
ctaattctgtctatggattgttcatgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattg |
20086560 |
T |
|
| Q |
301 |
cccattatccaaagaagct |
319 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
20086559 |
cccattatccaaacaagct |
20086541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 18997655 - 18997338
Alignment:
| Q |
1 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||| |||||| ||||||| ||||| |||||||| ||||||| |
|
|
| T |
18997655 |
ctcaatccttattcgattcctctgttttgcaactatcaaggcagaggactctacttttctgtattccttttgttcctccaatcttaccacaaccaatagc |
18997556 |
T |
|
| Q |
101 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | ||| | |
|
|
| T |
18997555 |
acctaccaaatcaataccaggacactcctctcttcattgtcatcagaagccaccgtcaacaccgaattctacaacaccacagtcaccggtgtaaatcgaa |
18997456 |
T |
|
| Q |
201 |
ctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| || |||| |||||| |||| ||||||||||||| |||||| | |||||| |||||||||||| |
|
|
| T |
18997455 |
ctgattctgtctatggattgttcatgtgcaggggtgacgtctcctctcaaatctgtgttgaatgcatagttcatgcaactaaaaaactgtccttagattg |
18997356 |
T |
|
| Q |
301 |
cccattatccaaagaagc |
318 |
Q |
| |
|
||| ||||||||| |||| |
|
|
| T |
18997355 |
ccctttatccaaacaagc |
18997338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 240
Target Start/End: Complemental strand, 20128569 - 20128333
Alignment:
| Q |
4 |
aatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagcacc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
20128569 |
aatccttattcgattcctttgttttgcaactatcaaggcacaagactctacttttctgtattccatttgttcctccaatcgtaccacaaccaatagcacc |
20128470 |
T |
|
| Q |
104 |
taccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccactctg |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
20128469 |
taccaaatcaataccaggacactcctctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctctg |
20128370 |
T |
|
| Q |
204 |
attctgtctatggattgttcatgtgtaggggtgatgt |
240 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |
|
|
| T |
20128369 |
attctgtctatggattgttcatgtgcagaggtgatgt |
20128333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 22204301 - 22204537
Alignment:
| Q |
4 |
aatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagcacc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
22204301 |
aatccttattcgattcctttgttttgcaactatcaaggcacaagactctacttttctgtattccatttgttcctccaatcgtaccacaaccaatagcacc |
22204400 |
T |
|
| Q |
104 |
taccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccactctg |
203 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
22204401 |
taccaaatcaataccaggacactcctctcttctttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcactagtataaacccctctg |
22204500 |
T |
|
| Q |
204 |
attctgtctatggattgttcatgtgtaggggtgatgt |
240 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| |
|
|
| T |
22204501 |
attctgtctatggattgttcatgtgcagaggtgatgt |
22204537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 318
Target Start/End: Complemental strand, 20238688 - 20238455
Alignment:
| Q |
85 |
taccacaagcaatagcacctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtc |
184 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| || || || |||||| | |||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
20238688 |
taccacaatcaacagcaccttccaaatcaatcttaacacccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacaccacagtc |
20238589 |
T |
|
| Q |
185 |
accacaggaaaccactctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaa |
284 |
Q |
| |
|
|| | | ||| | | |||||||||||||||||||||||||||| |||||||| || | || |||| | ||| |||||||| |||||||||| | ||||| |
|
|
| T |
20238588 |
actagtgtaaatcccactgattctgtctatggattgttcatgtgcaggggtgacgtctactctcaactctgtcatgaatgcgtagttaatgctactcaaa |
20238489 |
T |
|
| Q |
285 |
aaccgtccttagattgcccattatccaaagaagc |
318 |
Q |
| |
|
|| ||||||||| ||||| ||||| ||| |||| |
|
|
| T |
20238488 |
aattgtccttagactgccctttatcaaaacaagc |
20238455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 85 - 318
Target Start/End: Complemental strand, 22132672 - 22132439
Alignment:
| Q |
85 |
taccacaagcaatagcacctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtc |
184 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| || || || |||||| | |||||||||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
22132672 |
taccacaatcaacagcaccttccaaatcaatcttaacacccttctctctaccttgtcatcaaaagccatagacaacactgaattctacaacaccacagtc |
22132573 |
T |
|
| Q |
185 |
accacaggaaaccactctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaa |
284 |
Q |
| |
|
|| | | ||| | | |||||||||||||||||||||||||||| |||||||| || | || |||| | ||| |||||||| |||||||||| | ||||| |
|
|
| T |
22132572 |
actagtgtaaatcccactgattctgtctatggattgttcatgtgcaggggtgacgtctactctcaactctgtcatgaatgcgtagttaatgctactcaaa |
22132473 |
T |
|
| Q |
285 |
aaccgtccttagattgcccattatccaaagaagc |
318 |
Q |
| |
|
|| ||||||||| ||||| ||||| ||| |||| |
|
|
| T |
22132472 |
aattgtccttagactgccctttatcaaaacaagc |
22132439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 51 - 293
Target Start/End: Original strand, 24384560 - 24384803
Alignment:
| Q |
51 |
ctacttttctgcattcctattgttccaccaatggtaccacaagcaatagcacctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagc |
150 |
Q |
| |
|
|||||||| || ||||| |||||||||||| | |||||||| ||||||||||| ||||| ||| || ||| ||| ||||||| ||||||||||||| |
|
|
| T |
24384560 |
ctacttttatgtattccaattgttccaccattcgtaccacagccaatagcaccttccaaactaatctcatgactctcttctcttctttgtcatcaaaaga |
24384659 |
T |
|
| Q |
151 |
caccggcaacaccgaattctacaacaccacagtcacca-caggaaaccactctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttca |
249 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||| | | || || ||||||| ||||||||||||||||||||| |||||||| | | || ||| |
|
|
| T |
24384660 |
cgtcagcaacaccgaattctacaacacctcagtcattagtataaaccctatctgattttgtctatggattgttcatgtgcaggggtgacatttactctca |
24384759 |
T |
|
| Q |
250 |
aatatgtgatgaatgcatagttaatgcaattcaaaaaccgtcct |
293 |
Q |
| |
|
| | ||| ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
24384760 |
actttgtcatgaatgcatagttaatgcaactcaaaaactgtcct |
24384803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 21972608 - 21972555
Alignment:
| Q |
133 |
ttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcac |
186 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
21972608 |
ttcattgtcatcaaaagccataggcaacaccaaattctacaacaccacagtcac |
21972555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 20206051 - 20205943
Alignment:
| Q |
129 |
tctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccactctgattctgtctatggattgttcatgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||| |||||||| | ||| | ||||| || |||||||||| ||||||||| |
|
|
| T |
20206051 |
tctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
20205952 |
T |
|
| Q |
229 |
taggggtga |
237 |
Q |
| |
|
||| ||||| |
|
|
| T |
20205951 |
tagaggtga |
20205943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 237
Target Start/End: Complemental strand, 22100074 - 22099966
Alignment:
| Q |
129 |
tctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccactctgattctgtctatggattgttcatgtg |
228 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| ||||||||||| |||||||| | ||| | ||||| || |||||||||| ||||||||| |
|
|
| T |
22100074 |
tctcttcattgtcatcaaaagccaaaggaaacaccaaattctacaaccatacagtcactagtataaatccttctgagtccgtctatggatcgttcatgtg |
22099975 |
T |
|
| Q |
229 |
taggggtga |
237 |
Q |
| |
|
||| ||||| |
|
|
| T |
22099974 |
tagaggtga |
22099966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 16793 - 16490
Alignment:
| Q |
1 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| ||||||| || ||||| ||||||||||||||| ||||||| |
|
|
| T |
16793 |
ctcaatccttattcgattcctttgttttgcaactatcaaggcacaggactctattt---------------gttcctccaatggtaccacaaccaatagc |
16709 |
T |
|
| Q |
101 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
16708 |
acctaccaaatcaataccaggacactcctctcttccttatcatcaaaagccgtcggcaacaccgaattctacaacaccacagtcaccacaggaaacccct |
16609 |
T |
|
| Q |
201 |
ctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
16608 |
ctgattctgtctatggattgttcatgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactttccttagattg |
16509 |
T |
|
| Q |
301 |
cccattatccaaagaagct |
319 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
16508 |
cccattatccaaacaagct |
16490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 4645 - 4954
Alignment:
| Q |
1 |
ctcaatccttattcgattcctttgttttgcaactatcgaggcacaagactctacttttctgcattcctattgttccaccaatggtaccacaagcaatagc |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
4645 |
ctcaatccttattcgattcttttgttttgcaactatcaaggcacaggactctacttttctgtattccaattgttccaccaatcgtaccacagccaatagc |
4744 |
T |
|
| Q |
101 |
acctaccaaatcaataccaagacactcctctcttcattgtcatcaaaagccaccggcaacaccgaattctacaacaccacagtcaccacaggaaaccact |
200 |
Q |
| |
|
|||| ||||| ||| || ||| ||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||| || |
|
|
| T |
4745 |
accttccaaactaatctcatgaccctcctttcttccttgtcatcaaaagccacaggcaacaccgaattctacaa---------catcacaggaaacccct |
4835 |
T |
|
| Q |
201 |
ctgattctgtctatggattgttcatgtgtaggggtgatgtgtcctttcaaatatgtgatgaatgcatagttaatgcaattcaaaaaccgtccttagattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4836 |
ctgattctgtctatggattgttcatgtgcaggggtgatgtcacctttcaaatctgtgatgaatgcatagttaatgcaactcaaaaactgtccttagattg |
4935 |
T |
|
| Q |
301 |
cccattatccaaagaagct |
319 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
4936 |
cccattatccaaacaagct |
4954 |
T |
|
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