View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_19 (Length: 326)
Name: NF15133_low_19
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_19 |
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| [»] scaffold0140 (1 HSPs) |
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| [»] scaffold0524 (1 HSPs) |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 35518 - 35774
Alignment:
| Q |
2 |
atttttgcaattcgtccttgtatc---ttttttgtttcaaaactctccttgtaag-cttttttcgttttgcaaatggtccttcccattaactcccattac |
97 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
35518 |
atttttgcaattcgtccctgtattcttttttttgtttcaaaactctccttgtaagtcttttttcgttttgcaaatggtcattcccgttaactcccgttac |
35617 |
T |
|
| Q |
98 |
aaaaatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagtggctagattcaggg |
197 |
Q |
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||||| ||| |||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||| |||| |||||||||||| |||| |
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| T |
35618 |
aaaaacggcgaggtggcagacggagacacacgtggcttacggtgacttggcaaaaggagggttacgtgtcaaaagagctgggtagtggctagattgaggg |
35717 |
T |
|
| Q |
198 |
accaaaacgaaaaacgaaagagtgcaaagggatgaaatt-aaaaagtcttaaatatc |
253 |
Q |
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|| | || ||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
35718 |
actacaaagaaaaacgaaaaagtgcaaagggatgaaattaaaaaagtcataaatatc |
35774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 52947383 - 52947565
Alignment:
| Q |
2 |
atttttgcaattcgtccttgtatctttt-ttgtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactcccattacaaa |
100 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||||||| |
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| T |
52947383 |
atttttgcaattcgtccatgtatctttttttgtttcaaaactctccttgtaagcttttttcgttttgcaaatgattcttcccgttaactcccgttacaaa |
52947482 |
T |
|
| Q |
101 |
aatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagt |
183 |
Q |
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| T |
52947483 |
aacggcgaggtggcaggcggagacatacgtggcttagtgtgacttgacaaaaggagggttacgtgtcaaaagagttggtgagt |
52947565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 46604670 - 46604714
Alignment:
| Q |
197 |
gaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa |
241 |
Q |
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||||||||| ||||||| || ||||||||||||||||||| |||| |
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| T |
46604670 |
gaccaaaaccaaaaacgtaaaagtgcaaagggatgaaattgaaaa |
46604714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 241
Target Start/End: Complemental strand, 9029 - 8851
Alignment:
| Q |
64 |
tttgcaaatggtccttcccattaactcccattacaaaaatggctaggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacg |
163 |
Q |
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||||||| | |||| |||| ||||||||| ||||||||| | ||||| |||||||||||||||||| | ||||| ||||||||| ||||| | |
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| T |
9029 |
tttgcaattcgtccctcccgttaactcccgttacaaaaacgttgtggtggtagacggagacacacgtggtgaagtgtgagttggcaaaagctttgttatg |
8930 |
T |
|
| Q |
164 |
tgtcaaaagagttggggagtggctagattc-agggaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa |
241 |
Q |
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|||||| |||| || ||||||||||| |||||||||||| |||| || || | |||| ||||||||||||||||| |
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| T |
8929 |
tgtcaagagagatgatgagtggctagaaaggagggaccaaaaccaaaaccgcaaaattgcagagggatgaaattaaaaa |
8851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 133
Target Start/End: Complemental strand, 10468 - 10337
Alignment:
| Q |
3 |
tttttgcaattcgtccttgtatctttttt-gtttcaaaactctccttgtaagcttttttcgttttgcaaatggtccttcccattaactcccattacaaaa |
101 |
Q |
| |
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||||||||| |||||| |||||||||||| ||||||||| ||||| |||| | | | ||||||| | |||| |||| ||||||||| |||||||| |
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| T |
10468 |
tttttgcaaatcgtccctgtatctttttttgtttcaaaatcatccttataagttactagccgtttgcaattcgtccctcccgttaactcccgttacaaaa |
10369 |
T |
|
| Q |
102 |
atggctaggtggcagacggagacacacgtggc |
133 |
Q |
| |
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| | ||||||||||||||||||||||||| |
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| T |
10368 |
acgttgtggtggcagacggagacacacgtggc |
10337 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 28848595 - 28848632
Alignment:
| Q |
3 |
tttttgcaattcgtccttgtatcttttttgtttcaaaa |
40 |
Q |
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||||||||| |||||| ||||||||||||||||||||| |
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| T |
28848595 |
tttttgcaaatcgtccctgtatcttttttgtttcaaaa |
28848632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 241
Target Start/End: Original strand, 5236379 - 5236512
Alignment:
| Q |
109 |
ggtggcagacggagacacacgtggcttactgtgacctggcaaaaggagtgttacgtgtcaaaagagttggggagtggctagattc-agggaccaaaacga |
207 |
Q |
| |
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||||| ||| ||||||||||||||| | |||| ||||||||| || ||| ||||||| |||| || ||||||||||| ||||||||| || | |
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| T |
5236379 |
ggtggtagatggagacacacgtggcgaatggtgagttggcaaaagcagaattatgtgtcaagagagatgatgagtggctagaaaggagggaccaagacca |
5236478 |
T |
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| Q |
208 |
aaaacgaaagagtgcaaagggatgaaattaaaaa |
241 |
Q |
| |
|
|||||| || | |||||||||||||||||||||| |
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| T |
5236479 |
aaaacgcaaaattgcaaagggatgaaattaaaaa |
5236512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 28563604 - 28563652
Alignment:
| Q |
193 |
cagggaccaaaacgaaaaacgaaagagtgcaaagggatgaaattaaaaa |
241 |
Q |
| |
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||||||||||||| |||||||||| || ||||||||| |||||||||| |
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| T |
28563604 |
cagggaccaaaaccaaaaacgaaaaggtacaaagggataaaattaaaaa |
28563652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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