View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_2 (Length: 904)
Name: NF15133_low_2
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 631
Target Start/End: Original strand, 15242444 - 15243062
Alignment:
| Q |
16 |
catttatccattgaaatatgatgcggcaatcataatccaacattttataatgatgtggcatattttatattctgagtttgcattttacaaaa-gataata |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||| |||||||||||||||| ||||||| |
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| T |
15242444 |
catttatccattgaaatatgatgcggcaatcataatc-aacattttataatgatgtggcacattttatgttctgaatttgcattttacaaaaagataata |
15242542 |
T |
|
| Q |
115 |
aatcaaaaatagtttaggtttaatgaaacaattgagctcaagtggttaatgagcttcacaattcgggattactcgagtttgattttcagatggaacaatt |
214 |
Q |
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||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15242543 |
aatcaaaaatagtttaggtttaaccaaataattgagttcaagtggttaatgagcttcacaattcgggattcatcgagtttgattttcagatggaacaatt |
15242642 |
T |
|
| Q |
215 |
ctagatcaggctattcttacctcacgactgaactccggattaccattacccttttttcctataaaccataggattaacgtaaaaaactagtttagggttt |
314 |
Q |
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|||| |||| ||||||||||||||| || ||||||||||||||| | | ||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
15242643 |
ctaggtcagactattcttacctcacaaccgaactccggattaccgtgatccttttttcctataaaccataggattatcgtaaaaaaatagtttagggttt |
15242742 |
T |
|
| Q |
315 |
tcttctcattcttcccctcatctttttctttcaaacttagcaaaagatttaatcatctctctcctattatcatttccttctttcttagcagcaaaaatac |
414 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15242743 |
tgttctcattcttcccctcatctttttctttcaaacttagcaaaagatttaatcatctctct-ctattatcatttccttctttcttagcagcaaaaatac |
15242841 |
T |
|
| Q |
415 |
tattaactcaaatatattttattactccttaattaataccttaaaatatattttatagcaaaaataaagtcaagtaatttttaaagaagctatgactata |
514 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15242842 |
tattaacgcaaatatattttattactccttaattaataccttaaaatatattttatagcaaaaataaagtcaagtaatttttaaagaagctatgattata |
15242941 |
T |
|
| Q |
515 |
agc----tannnnnnnaagatatgttaatagtgaaaataagaatgcataatagcttgcttgtgtaacaagtaatgtaatagtgatataactaactaacag |
610 |
Q |
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||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15242942 |
agctttttttttttttaagatatgttaatagtgaaaataagaatgcataatagcttgcttgtttaacaagtaatgtaatagtgatataactaactaacag |
15243041 |
T |
|
| Q |
611 |
ttagtttgttagatagttagt |
631 |
Q |
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||||||||||||||||||||| |
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| T |
15243042 |
ttagtttgttagatagttagt |
15243062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 633 - 904
Target Start/End: Original strand, 15243227 - 15243518
Alignment:
| Q |
633 |
atatgtgtcaccgtatttagttcattatagagtagcagaacaaactctctata--tagctcgcatatcacattgtaatagttagattagtgaaataaaat |
730 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15243227 |
atatgtgtcaccgtatttagttcattatagagtagcagaacaaactctatatatatagctcgcatatcacattgtaatagttagattagtgaaataaaat |
15243326 |
T |
|
| Q |
731 |
ttctcttcttatcatgcttcttctcttagctcttatgcatatttgcaagctttttctat-------------------tcaccttttcacatggtatcag |
811 |
Q |
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| T |
15243327 |
ttctcttcttatcatgcttcttctcttagctcttatgcatatttgcaagc-ttttctattcattaataaagattgagatcacctttttacatggtatcag |
15243425 |
T |
|
| Q |
812 |
tggcacattgatctcgttttctgccattgggctccatcgttttgcttgcgttctttgatttctcaccattctcaacaaatttcagtttcttct |
904 |
Q |
| |
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||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15243426 |
tggcatattgatcttgatttctgccattgggctccatcgttttgcttgcgttctttgatttctcaccactctcaacaaatttcagtttcttct |
15243518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 574 - 784
Target Start/End: Original strand, 15246524 - 15246734
Alignment:
| Q |
574 |
taacaagtaatgtaatagtgatataactaactaacagttagtttgttagatagttagtaatatgtgtcaccgtatttagttcattatagagtagcagaac |
673 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | ||| ||||||| ||||||||| |||||||| || |||| |||| |||| ||||||||||| || |
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| T |
15246524 |
taacaagcaatgtaatagtgatataactaactaataattaatttgttaaatagttagttatatgtgtaactgtatctagtacattgtagagtagcaggac |
15246623 |
T |
|
| Q |
674 |
aaactctctatatagctcgcatatcacattgtaatagttagattagtgaaataaaatttctcttcttatcatgcttcttctcttagctcttatgcatatt |
773 |
Q |
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||||||| ||||||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
15246624 |
aaactctatatatagctagcatatcatattataatcgttagattggtgaaataaaatttctcttcttatcatgcttcttctctaagcttttatgcatatt |
15246723 |
T |
|
| Q |
774 |
tgcaagctttt |
784 |
Q |
| |
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| T |
15246724 |
ttcaagctttt |
15246734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 30593379 - 30593436
Alignment:
| Q |
203 |
gatggaacaattctagatcaggctattcttacctcacgactgaactccggattaccat |
260 |
Q |
| |
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|||||||||||||| | ||| |||| ||||||||| ||| ||||||||||||||||| |
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|
| T |
30593379 |
gatggaacaattcttggccagactatacttacctcatgaccgaactccggattaccat |
30593436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 531 - 781
Target Start/End: Complemental strand, 12087317 - 12087076
Alignment:
| Q |
531 |
tatgttaatagtgaaaataagaatgcataatagcttgcttgtgtaacaagtaatgtaatagtgatataactaactaacagttagtttgttagatagttag |
630 |
Q |
| |
|
||||||||||| |||||| |||| | | |||||||||||||| |||||| ||||||||| ||||||||||| || |||||||||| |||| |||| | |
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|
| T |
12087317 |
tatgttaatagggaaaattagaaggaaaaatagcttgcttgttcaacaagcaatgtaataaagatataactaattagaagttagtttgatagagagttgg |
12087218 |
T |
|
| Q |
631 |
taatatgtgtcaccgtatttagttcattatagagtagcagaacaaactctctatatagctcg-catatcacattgtaatagttagattagtgaaataaaa |
729 |
Q |
| |
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| |||||||| | |||| ||||| ||||||| |||||||||| |||||| | | |||||| ||||||| |||||||| ||||||||||| |
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| T |
12087217 |
ttatatgtgtaattgtatctagtt-------tagtagcaaaacaaactctatatata--tagatatatcagattgtaacggttagattggtgaaataaaa |
12087127 |
T |
|
| Q |
730 |
tttctcttcttatcatgcttcttctcttagctcttatgcatatttgcaagct |
781 |
Q |
| |
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|| |||||| ||||||||||| ||| ||||||||||||| ||||||| |
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| T |
12087126 |
aaattcctcttatggtgcttcttctc-tagttcttatgcatattagcaagct |
12087076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 169
Target Start/End: Original strand, 4248020 - 4248055
Alignment:
| Q |
134 |
ttaatgaaacaattgagctcaagtggttaatgagct |
169 |
Q |
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| T |
4248020 |
ttaatgaaacaattgatctcaagtggttaatgagct |
4248055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 173
Target Start/End: Complemental strand, 9801477 - 9801444
Alignment:
| Q |
140 |
aaacaattgagctcaagtggttaatgagcttcac |
173 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
9801477 |
aaacaattgaactcaagtggttaatgagcttcac |
9801444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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