View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15133_low_23 (Length: 303)

Name: NF15133_low_23

Description: NF15133

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15133_low_23

[»] chr1 (1 HSPs)

Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 141; E-Value: 6e-74

Query Start/End: Original strand, 19 - 303

Target Start/End: Original strand, 29526691 - 29526986

Alignment:

Q	19	caaccgagatggttcgttttttccttaaatggattagttgtactatcgtaattttttaattaa--------------tacgcataaataattcnnnnnnn	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	29526691	caaccgagatggttcgttttttccttaaatggattagttgtactatcataattttttaattaaataattttaattaatacgcataaataattcttttttt	29526790	T

Q	105	agacactcaaataattctttaagatctttnnnnnnngttacatataatgctttatggattacnnnnnnn-aataataaatagagatgacatgacaaatag	203	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|
T	29526791	agacacttaaataattctttaagatctttaaaaaaaggtacatataatgctttatggattacttttttttaataataaataaagatgacatgacaaatcg	29526890	T

Q	204	caagaaaataagagaaaattacaccaacacttttaggcatgtaagtctcatatatatatcatcaaagatgagattttgtagcttcctacaatgagcctcc	303	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	29526891	caagaaaataagagaaaattacaccaacacttttaggcatgtaagtctc----atatatcatcaaagatgagattttgtagcttcctacaaggagcctcc	29526986	T

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