View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_24 (Length: 299)
Name: NF15133_low_24
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 27 - 260
Target Start/End: Complemental strand, 45710221 - 45709988
Alignment:
| Q |
27 |
catgagaatatagttgtggccgcagttatatttctgctgcaattannnnnnnataatcaaaatctgcaaagtttgatatatgaatttaattagtatgcat |
126 |
Q |
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| T |
45710221 |
catgagaatatagttgtggccgcagttatatttctgctgcaattatttttttattatcaaaatctgcaaagtttgatatatgaatttaattagtatgcat |
45710122 |
T |
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| Q |
127 |
tgtcaatatacaattattttatgcatgtactcaatgatatgttagtgcgtcaattaataaatatgacaactttatatcgttaatgtatagtaattaaact |
226 |
Q |
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| T |
45710121 |
tgtcaatatacaattattttatgcatgtactcaatgatatgttagtgcgtcaattaataaatatgacaactttatatcgttaatgtatagtaattaaact |
45710022 |
T |
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| Q |
227 |
cttgatggtcctatcttgcttaacttgtgtgttt |
260 |
Q |
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| T |
45710021 |
cttgatggtcctatcttgcttaacttgtgtgttt |
45709988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 45709985 - 45709953
Alignment:
| Q |
253 |
gtgtgtttgtggtttttatgatggagctagttg |
285 |
Q |
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| T |
45709985 |
gtgtgtttgtggtttttatgatggagctagttg |
45709953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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