View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15133_low_3 (Length: 682)

Name: NF15133_low_3
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15133_low_3
NF15133_low_3
[»] chr7 (3 HSPs)
chr7 (285-664)||(48520649-48521027)
chr7 (13-281)||(48521321-48521590)
chr7 (13-269)||(39440569-39440824)
[»] chr1 (2 HSPs)
chr1 (51-269)||(19192691-19192908)
chr1 (52-269)||(44199844-44200060)
[»] scaffold0683 (1 HSPs)
scaffold0683 (71-269)||(7478-7675)
[»] scaffold0557 (2 HSPs)
scaffold0557 (13-204)||(7471-7662)
scaffold0557 (116-234)||(7323-7444)
[»] chr2 (2 HSPs)
chr2 (116-269)||(29467807-29467960)
chr2 (13-204)||(29467589-29467780)
[»] chr6 (6 HSPs)
chr6 (13-204)||(14464502-14464693)
chr6 (116-234)||(18716158-18716278)
chr6 (116-236)||(15906147-15906269)
chr6 (52-193)||(18716300-18716439)
chr6 (116-173)||(14464418-14464475)
chr6 (196-269)||(14464345-14464418)
[»] chr5 (1 HSPs)
chr5 (116-236)||(42882125-42882248)
[»] chr8 (3 HSPs)
chr8 (116-236)||(7964014-7964136)
chr8 (116-236)||(8224613-8224737)
chr8 (13-193)||(7963759-7963937)
[»] chr4 (3 HSPs)
chr4 (51-204)||(19110984-19111137)
chr4 (116-236)||(19111164-19111286)
chr4 (64-102)||(8364635-8364673)
[»] scaffold0726 (2 HSPs)
scaffold0726 (13-204)||(4690-4881)
scaffold0726 (116-236)||(4908-5030)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 285 - 664
Target Start/End: Complemental strand, 48521027 - 48520649
Alignment:
Q  285 tattttaatatataacaatggctaattattttttacgattcatattcaccagtttgtgagatgttattccatcaaccaagagagatataaaggttttctt 384  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48521027 tattttaatatataacaatggctaattattttttacgtttcatatgcaccagtttgtgagattttattccatcaaccaagagagatataaaggttttctt 48520928  T
Q  385 attgttttcaattgtacaaattaaacggggtttacttctttttaattatgnnnnnnnnnagttaaagatgtagaaagaattaacaaaaatcatttgtgtg 484  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||          |||||| |||||||||||||||||||||||||||||| ||    
T  48520927 attgttttcaattgtacaaattaaacggggtttacttctttttagttatgtttttttttggttaaaaatgtagaaagaattaacaaaaatcatttgtatg 48520828  T
Q  485 ctaagtaaaatatattgtgtgcaacctattgagaaacaaagtgagggagaaggagaacaaggaggaagaagagggaaccacttggaggagctgttttgga 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48520827 ctaagtaaaatatattgtgtgcaacctattgagaaacaaagtgagggagaaggagaacaaggaggaagaagagggaaccacttggaggagctgttttgga 48520728  T
Q  585 agtcaatggcattggacttggatacataaagtaagaaaataggaaggaagtcatggtggttaaccccccaacactgttac 664  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48520727 aggcaatggcattggacttggatacataaagtaagaaaataggaaggaagtcatggtggtt-accccccaacactgttac 48520649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 48521590 - 48521321
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48521590 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaaaaaa 48521491  T
Q  113 aaatt-aaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagtatatgctatgcttttggatctt 211  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48521490 aaatttaaaagtcattatgctttgtaaatgatacttacagattcacattgatattttggaatcatattaaaagcaagtatatgctatgcttttggatctt 48521391  T
Q  212 gaatatcctatttacatcccatatgtggatgaattatagtttgaaaatctcccatatcttttgatctact 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  48521390 gaatatcctatttacatcccatatgtggatgaattatagtttgaaaagctcccatatcttttgatctact 48521321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 39440824 - 39440569
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    ||||||||| ||||||||  |||| |||| ||  ||  ||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||||  |   |    
T  39440824 attattcttttgttaaatctaagtatgtttcttacacggtttcaagtggtcaacacaataacacgatgcaagatgtttgtattattcttagaaata---a 39440728  T
Q  113 aaattaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagt--atatgctatgcttttggatct 210  Q
     | |||||||||| ||||||||||||||||||||||||  |||||||||| ||||||||||||| |||| |||||||  |||| ||||||||||  ||||    
T  39440727 tatttaaaagtcactatgctttgtaaatgatacttacaagttcacattcaaattttggaatcatcttaagagcaagtatatatactatgcttttttatct 39440628  T
Q  211 tgaatatcctatttacatcccatatgtggatgaattatagtttgaaaatctcccatatc 269  Q
    |||||||||||||| |||||||||||||||||| |||||  ||||| |||||| |||||    
T  39440627 tgaatatcctatttccatcccatatgtggatgatttatatgttgaatatctcctatatc 39440569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 51 - 269
Target Start/End: Original strand, 19192691 - 19192908
Alignment:
Q  51 gtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaaaaattaaaagtcattatgctttgtaaatgatacttaca 150  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||  |   | | |||||||||| ||||||||||||||||||||||||    
T  19192691 gtttcaagtggtcaacacaataacacgatgtaagatgtttgtattattcttagaaata---atatttaaaagtcactatgctttgtaaatgatacttaca 19192787  T
Q  151 tattcacattcatattttggaatcatattaaaagcaag--tatatgctatgcttttggatcttgaatatcctatttacatcccatatgtggatgaattat 248  Q
      |||||||||| ||| ||||||||| | || ||||||  ||||| |||| |||||  |||||||||||||||||| | |||||||||||||||| ||||    
T  19192788 agttcacattcaaattatggaatcatctaaagagcaagtatatatactatacttttttatcttgaatatcctattttcttcccatatgtggatgatttat 19192887  T
Q  249 agtttgaaaatctcccatatc 269  Q
    |  ||||| |||||| |||||    
T  19192888 atgttgaatatctcctatatc 19192908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 52 - 269
Target Start/End: Original strand, 44199844 - 44200060
Alignment:
Q  52 tttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaaaaattaaaagtcattatgctttgtaaatgatacttacat 151  Q
    |||||| ||||||||||||||||| |||  ||||||||||| ||||||||||||  |   | | |||||||||| ||||||||||||||||||||||||     
T  44199844 tttcaagtggtcaacacaataacacgatacaagatgtttgtattattcttagaaata---atatttaaaagtcactatgctttgtaaatgatacttacaa 44199940  T
Q  152 attcacattcatattttggaatcatattaaaagcaag--tatatgctatgcttttggatcttgaatatcctatttacatcccatatgtggatgaattata 249  Q
     || ||||||| ||| ||||||||| |||| ||||||  |||||  |||||||||  ||||| |||||||||||| |||||||||||||||||| |||||    
T  44199941 gtttacattcaaattatggaatcatcttaagagcaagtatatatattatgcttttttatctttaatatcctatttccatcccatatgtggatgatttata 44200040  T
Q  250 gtttgaaaatctcccatatc 269  Q
      ||||| |||||| |||||    
T  44200041 tgttgaatatctcctatatc 44200060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 71 - 269
Target Start/End: Original strand, 7478 - 7675
Alignment:
Q  71 taacatgatgtaagatgtttgtcttattcttagaagaagaaaaaattaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttgg 170  Q
    ||||| |||| ||||||||||| ||||||||||||  |   | | |||||| ||| ||||||||||||||||||||||||  ||||| |||| ||| | |    
T  7478 taacacgatgcaagatgtttgtattattcttagaaata---atatttaaaaatcactatgctttgtaaatgatacttacaagttcacgttcaaattctag 7574  T
Q  171 aatcatattaaaagcaagtatatg--ctatgcttttggatcttgaatatcctatttacatcccatatgtggatgaattatagtttgaaaatctcccatat 268  Q
    |||||| |||| |||||||||||   ||||||||||  |||||||||||||||||| |||||||||||||||||| |||||  ||||| |||||| ||||    
T  7575 aatcatcttaagagcaagtatatagactatgcttttttatcttgaatatcctatttccatcccatatgtggatgatttatatgttgaatatctcctatat 7674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 7662 - 7471
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||| |||||||||||||  |||| |||||||  ||  ||||||| |||||||||||||||||||||| ||||||||||| ||||||||   | ||  ||    
T  7662 attaatcttctgttaaatctaagtatgttccttacacggtttcaagtggtcaacacaataacatgatgcaagatgtttgtattattctt---aaaaataa 7566  T
Q  113 aaattaaaagtcattatgctttgt-aaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgctttt 204  Q
     | |||||||||| |||||||||| ||||||||||||||  |||||||| | ||||||||||||| |||| ||||||  ||||||||||||||||    
T  7565 tatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaatagcaagtatatatgctatgctttt 7471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0557; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 7444 - 7323
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagt--atatgctatgc-ttttggatcttg 212  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||  |||| |||||| ||||  ||||||    
T  7444 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactatgcttttttcatcttg 7345  T
Q  213 aatatcctatttacatcccata 234  Q
    ||||||||||||  ||||||||    
T  7344 aatatcctatttctatcccata 7323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 29467807 - 29467960
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgcttttggatcttga 213  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||  ||| ||||||  ||||| ||||||||||  |||||||    
T  29467807 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcataagagcaagtatatatactatgcttttttatcttga 29467906  T
Q  214 atatcctatttacatcccatatgtggatgaattatagtttgaaaatctcccatatc 269  Q
    |||||||||||  |||||||||| |||  |||||||| || || |||||| |||||    
T  29467907 atatcctatttctatcccatatgagga--aattataggttcaatatctcctatatc 29467960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 29467589 - 29467780
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||| |||||||||||||  |||| |||| ||  ||  ||||||| |||||||||||||||||| ||| |||||  |||| ||||||||| ||  |   |    
T  29467589 attaatcttctgttaaatctaagtatgtttcttacacggtttcaagtggtcaacacaataacataatgcaagattgttgtattattcttaaaaata---a 29467685  T
Q  113 aaattaaaagtcattatgctttgtaaa-tgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgctttt 204  Q
     | |||||||||| ||||||||||||| |||||||||||  |||||||| | ||||||||||||| |||  ||||||  ||||||||||||||||    
T  29467686 tatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttatgagcaagtatatatgctatgctttt 29467780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 14464693 - 14464502
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||| |||||||||||||  |||| |||||||  ||  ||||||| ||||||||||| |||||||||| ||||||||||| ||||||||| ||  |   |    
T  14464693 attaatcttctgttaaatctaagtatgttccttacacggtttcaagtggtcaacacagtaacatgatgcaagatgtttgtattattcttaaaaata---a 14464597  T
Q  113 aaattaaaagtcattatgctttgtaaa-tgatacttacatattcacattcatattttggaatcatattaaaagcaagt--atatgctatgctttt 204  Q
     | |||||||||| ||||||||||||| |||||||||||  |||||||| | ||||||||||||| |||| |||||||  |||||||||||||||    
T  14464596 tatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagagcaagtatatatgctatgctttt 14464502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 18716278 - 18716158
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagt--atatgctatgcttttggatcttga 213  Q
    ||||| |||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||  |||| ||||||||||  |||||||    
T  18716278 ttaaatgtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactatgcttttttatcttga 18716179  T
Q  214 atatcctatttacatcccata 234  Q
    |||||||||||  ||||||||    
T  18716178 atatcctatttctatcccata 18716158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 15906147 - 15906269
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagtatatg--ctatgcttttggatcttga 213  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| |||||||||||   || || ||||  |||||||    
T  15906147 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactttgtttttttatcttga 15906246  T
Q  214 atatcctatttacatcccatatg 236  Q
    |||||||||||  ||||||||||    
T  15906247 atatcctatttctatcccatatg 15906269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 52 - 193
Target Start/End: Complemental strand, 18716439 - 18716300
Alignment:
Q  52 tttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaaaaattaaaagtcattatgctttgtaaa-tgatacttaca 150  Q
    |||||| ||||||||||| |||||||||| || |||||||| ||||||||| ||  |   | | |||||||||| ||||||||||||| |||||||||||    
T  18716439 tttcaagtggtcaacacattaacatgatgcaatatgtttgtattattcttaaaaata---atatttaaaagtcaatatgctttgtaaaatgatacttaca 18716343  T
Q  151 tattcacattcatattttggaatcatattaaaagcaagtatat 193  Q
      || ||||| | ||||||||||||| |||| |||||||||||    
T  18716342 agtttacattaaaattttggaatcattttaagagcaagtatat 18716300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 14464475 - 14464418
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaat 173  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  14464475 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttggaat 14464418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 14464418 - 14464345
Alignment:
Q  196 tatgcttttggatcttgaatatcctatttacatcccatatgtggatgaattatagtttgaaaatctcccatatc 269  Q
    |||||||||  ||||||||||||||||||  |||||||||| |||||| |||||| || || |||||| |||||    
T  14464418 tatgcttttttatcttgaatatcctatttctatcccatatgaggatgatttataggttcaagatctcctatatc 14464345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 42882125 - 42882248
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgc-ttttggatcttg 212  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||  |||||||||||| ||||  ||||||    
T  42882125 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagcaagtatatatgctatgctttttttatcttg 42882224  T
Q  213 aatatcctatttacatcccatatg 236  Q
    ||||||||||||  ||||||||||    
T  42882225 aatatcctatttctatcccatatg 42882248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 7964014 - 7964136
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgcttttggatcttga 213  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||||||  ||||| ||||||||||  |||||||    
T  7964014 ttaaaagtcaatattctttgtaaatgatacttacaaattcacattcaaattttggaatcatcttaagagcaagtatatatactatgcttttttatcttga 7964113  T
Q  214 atatcctatttacatcccatatg 236  Q
     ||||||||||  ||||||||||    
T  7964114 ctatcctatttctatcccatatg 7964136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 8224737 - 8224613
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagtatatg--ctatgcttttgg--atctt 211  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| || ||||||||   ||||||||||    |||||    
T  8224737 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagtaagtatatatactatgcttttttttatctt 8224638  T
Q  212 gaatatcctatttacatcccatatg 236  Q
    |||||||||||||  ||||||||||    
T  8224637 gaatatcctatttctatcccatatg 8224613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 7963759 - 7963937
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||| |||||||||||||  |||| | |||||  ||  || |||| ||||||||||||||||| |||| |||||||||||  |||||||| ||  |   |    
T  7963759 attaatcttctgttaaatctaagtattttccttacacggtgtcaagtggtcaacacaataacacgatgcaagatgtttgtactattcttaaaaata---a 7963855  T
Q  113 aaattaaaagtcattatgctttgtaaa-tgatacttacatattcacattcatattttggaatcatattaaaagcaagtatat 193  Q
     | |||||||||| ||||||||||||| |||||||||    |||||||| | ||||| ||||||| |||| |||||||||||    
T  7963856 tatttaaaagtcaatatgctttgtaaaatgatacttaacagttcacattaaaattttagaatcattttaagagcaagtatat 7963937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 51 - 204
Target Start/End: Original strand, 19110984 - 19111137
Alignment:
Q  51 gtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaaaaattaaaagtcattatgctttgtaaa-tgatacttac 149  Q
    ||||||| |||||||||||||||||||||| ||||||||||| ||||||||| ||  |   | | |||||||||| ||||||||||||| ||||||||||    
T  19110984 gtttcaagtggtcaacacaataacatgatgcaagatgtttgtattattcttaaaaata---atatttaaaagtcaatatgctttgtaaaatgatacttac 19111080  T
Q  150 atattcacattcatattttggaatcatattaaaagcaag--tatatgctatgctttt 204  Q
    |  |||||||| | ||||||||||||| |||| ||||||  ||||||||||||||||    
T  19111081 aagttcacattaaaattttggaatcattttaagagcaagtatatatgctatgctttt 19111137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 19111164 - 19111286
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgcttttggatcttga 213  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| ||||||  |||||  |||||||||  |||||||    
T  19111164 ttaaaagtcaatatgctttgtaaatgatacttacaaattcacattcaaattttgaaatcatcttaagagcaagtatatataatatgcttttttatcttga 19111263  T
Q  214 atatcctatttacatcccatatg 236  Q
    |||||||||||  ||||||||||    
T  19111264 atatcctatttctatcccatatg 19111286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 8364635 - 8364673
Alignment:
Q  64 aacacaataacatgatgtaagatgtttgtcttattctta 102  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  8364635 aacacaataacataatgtaagatgtttgtattattctta 8364673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 4690 - 4881
Alignment:
Q  13 attattcttctgttaaattgaagtttgttcctagcatcgtttcaattggtcaacacaataacatgatgtaagatgtttgtcttattcttagaagaagaaa 112  Q
    |||| |||||||||||||  |||| |||||||  ||  ||||||| ||||||||||| |||||||||| ||||||||||| ||||||||   | ||  ||    
T  4690 attaatcttctgttaaatctaagtatgttccttacacggtttcaagtggtcaacacattaacatgatgcaagatgtttgtattattctt---aaaaataa 4786  T
Q  113 aaattaaaagtcattatgctttgt-aaatgatacttacatattcacattcatattttggaatcatattaaaagcaag--tatatgctatgctttt 204  Q
     | |||||||||| |||||||||| ||||||||||||||  |||||||| | ||||||||||||| |||| | ||||  ||||||||||||||||    
T  4787 tatttaaaagtcaatatgctttgtaaaatgatacttacaagttcacattaaaattttggaatcattttaagaccaagtatatatgctatgctttt 4881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 4908 - 5030
Alignment:
Q  116 ttaaaagtcattatgctttgtaaatgatacttacatattcacattcatattttggaatcatattaaaagcaagtatatg--ctatgcttttggatcttga 213  Q
    |||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||||| |||| |||||||||||   || || ||||  |||||||    
T  4908 ttaaaagtcaatatgctttgtaaatgatacttataaattcacattcaaattttggaatcatcttaagagcaagtatatatactttgtttttttatcttga 5007  T
Q  214 atatcctatttacatcccatatg 236  Q
    |||||||||||  ||||||||||    
T  5008 atatcctatttctatcccatatg 5030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University