View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_31 (Length: 234)
Name: NF15133_low_31
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_31 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 42578088 - 42578325
Alignment:
| Q |
1 |
ttaagattagggagaaataaagacaggaaagagatgcgcttaatatacaatgtgttaggataagcagattttcttcatcaactcgactttaatacattta |
100 |
Q |
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| T |
42578088 |
ttaagattagggagaaataaagaaaggaaagagatgagcttaatatacaatgtgataggataagcagattttcttcatcaactcgactttaatacattta |
42578187 |
T |
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| Q |
101 |
tcaagactgtt----taccaatagaaaaagatggaaggaaccaccaggtattattagtctcaactagatatcatcaagtctgctgggcttgtcctcggaa |
196 |
Q |
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| T |
42578188 |
tcaagactgttaggttaccaatagaaaaagatggaaggaaccaccaggtattattagtctcaactagatatcatcaagtctgctgagcttgtcctcggaa |
42578287 |
T |
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| Q |
197 |
ctagtcatcggaactacaactaccctcacaacactaac |
234 |
Q |
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| T |
42578288 |
ctagtcatcggaactacaactaccctcacaacactaac |
42578325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 42571038 - 42571077
Alignment:
| Q |
142 |
aggtattattagtctcaactagatatcatcaagtctgctg |
181 |
Q |
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| T |
42571038 |
aggtattattagtctcaactagatatcaacaagtctgctg |
42571077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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