View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15133_low_6 (Length: 535)
Name: NF15133_low_6
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15133_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 514
Target Start/End: Original strand, 36709615 - 36710130
Alignment:
| Q |
11 |
catcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcaccagcacgagcaccagcagcaccaacagcttgagcaactccac------- |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
36709615 |
catcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcaccagcaccagcaccagcaccaccaacagcttgagcaactccaccaccagc |
36709714 |
T |
|
| Q |
104 |
-----caccaacagtaggaaccctggaaacaacagaagaagacgaagaaccaacaacgtgaacaatcctaggcccactgaaagactcaacagtactactc |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
36709715 |
accaccaccaacagtaggaaccctggaaacaacagaagaagacgaagaaccaacaagctgaacaatcctaggcccactgaaagactcaacggtactactc |
36709814 |
T |
|
| Q |
199 |
ataccgcttgaagtaggccaattaacctgaacaacatctggctcaacaaatttcaaaacctcagccggccggttatcaacagcagccggaggctgaggat |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709815 |
ataccgcttgaagtaggccaattaacctgaacaacatctggctcaacaaatttcaaaacctcagccggccggttatcaacagcagccggaggctgaggat |
36709914 |
T |
|
| Q |
299 |
tttgagcggccacggctgcagtctcagccgcagccgcaagaatatgttcaggaatagggaaattagttttcgccttcgaagcgcgaaatttaatcgcggc |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36709915 |
tttgagcggccacggctgcagtctcagccgcagccgcaagaatatgttcaggaatagggaaattagttttcgccttcgaagcgcgaaatttaatcgcggc |
36710014 |
T |
|
| Q |
399 |
tgaatcatacgcaagtgcggcttgttctgcggtatcgtaagtccctaaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccc |
498 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36710015 |
tgaatcatacgcaagtgcggcttgttctgcggtatcgtaagtccctaaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccc |
36710114 |
T |
|
| Q |
499 |
catggtcgctttctaa |
514 |
Q |
| |
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|||||||||||||||| |
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| T |
36710115 |
catggtcgctttctaa |
36710130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 36722487 - 36722988
Alignment:
| Q |
11 |
catcatcaacaacagatgaagatgaatcacaaccactatgaaaatcttcaccagcacgagcaccagcagcaccaacagcttgagcaactccaccacca-- |
108 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||||| | || |||||||||||| ||||||||||||||| ||||||| ||||||||||| |
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| T |
36722487 |
catcatcaacagcagatgtagatgaatcacagccactatgaaattttttgccagcacgagcagcagcagcaccaacaggttgagcagctccaccaccagc |
36722586 |
T |
|
| Q |
109 |
-------acagtaggaaccctggaaacaacagaagaagacgaagaaccaacaacgtgaacaatcctaggcccactgaaagactcaacagtactactcata |
201 |
Q |
| |
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||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
36722587 |
accagcaacaataggaaccctggaaacagcagaagaagacgaagaaccaacaacctgaacaatcctaggcccactcaaagattcaacagtactactcata |
36722686 |
T |
|
| Q |
202 |
ccgcttgaagtaggccaattaacctgaacaacatctggctcaacaaatttcaaaacctcagccggccggttatcaacagcagccggaggctgaggatttt |
301 |
Q |
| |
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| |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||||||||||||| || |||||||||||| | |
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|
| T |
36722687 |
ctgcttgaagtaggccaattaacctgaacaacttcaggttcaacaaatttcaaaacctcagcccgacggttatcaacagcaaccaaaggctgaggattct |
36722786 |
T |
|
| Q |
302 |
gagcggccacggctgcagtctcagccgcagccgcaagaatatgttcaggaatagggaaattagttttcgccttcgaagcgcgaaatttaatcgcggctga |
401 |
Q |
| |
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|||||||| | |||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722787 |
gagcggccgcagctgcagtct------cagccgcaaggatatgttcagggatagggaaattagttttcgccttcgaagcgcgaaatttaatcgcggctga |
36722880 |
T |
|
| Q |
402 |
atcatacgcaagtgcggcttgttctgcggtatcgtaagtccctaaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccccat |
501 |
Q |
| |
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|||||| ||| |||| |||| ||| |||||||| | ||||| ||||| || || | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36722881 |
atcataagcatgtgcagcttcttcagcggtatcaaaggtccccaaccagactcgagctttcttccagggatctctaatctcagcagcgaatcgaccccat |
36722980 |
T |
|
| Q |
502 |
ggtcgctt |
509 |
Q |
| |
|
|||||||| |
|
|
| T |
36722981 |
ggtcgctt |
36722988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 418 - 509
Target Start/End: Complemental strand, 17082859 - 17082768
Alignment:
| Q |
418 |
gcttgttctgcggtatcgtaagtccctaaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgaccccatggtcgctt |
509 |
Q |
| |
|
|||||||| ||||||| |||| | ||||||| ||||| ||||||||||| ||||||| ||| |||||| | |||||||||||||||||||| |
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|
| T |
17082859 |
gcttgttcatcggtatcataagccactaaccagacacgagttttcttccacggatctcgaatttcagcaacaaatcgaccccatggtcgctt |
17082768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 17082125 - 17082181
Alignment:
| Q |
443 |
ctaaccatacacgggttttcttccagggatctctaatctcagcagcgaatcgacccc |
499 |
Q |
| |
|
||||||| ||||| ||||||||||| |||| || ||| |||||||| |||||||||| |
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|
| T |
17082125 |
ctaaccaaacacgagttttcttccatggatgtcgaatttcagcagcaaatcgacccc |
17082181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 509
Target Start/End: Original strand, 28795278 - 28795330
Alignment:
| Q |
457 |
gttttcttccagggatctctaatctcagcagcgaatcgaccccatggtcgctt |
509 |
Q |
| |
|
||||||||||| |||||| ||| |||||||||||| ||| |||||||||||| |
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|
| T |
28795278 |
gttttcttccacagatctcgaatttcagcagcgaatagactccatggtcgctt |
28795330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 509
Target Start/End: Complemental strand, 28796124 - 28796072
Alignment:
| Q |
457 |
gttttcttccagggatctctaatctcagcagcgaatcgaccccatggtcgctt |
509 |
Q |
| |
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||||||||||| ||||||| || |||||||||||| ||| |||||||||||| |
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| T |
28796124 |
gttttcttccacggatctcgtatttcagcagcgaatagactccatggtcgctt |
28796072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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