View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15133_low_8 (Length: 513)

Name: NF15133_low_8
Description: NF15133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15133_low_8
NF15133_low_8
[»] chr8 (4 HSPs)
chr8 (7-513)||(5662624-5663128)
chr8 (431-485)||(14678001-14678055)
chr8 (431-485)||(27541539-27541593)
chr8 (431-485)||(5657858-5657912)
[»] chr7 (7 HSPs)
chr7 (7-343)||(11649206-11649523)
chr7 (7-107)||(22007672-22007772)
chr7 (141-199)||(22007561-22007619)
chr7 (431-485)||(1262175-1262229)
chr7 (431-485)||(43071362-43071416)
chr7 (431-479)||(48849787-48849835)
chr7 (431-479)||(26909961-26910009)
[»] chr3 (17 HSPs)
chr3 (7-313)||(52131068-52131367)
chr3 (282-406)||(31688029-31688153)
chr3 (282-406)||(31896714-31896838)
chr3 (282-406)||(31912423-31912547)
chr3 (282-406)||(31946071-31946195)
chr3 (449-509)||(47763913-47763973)
chr3 (406-485)||(24761853-24761932)
chr3 (407-485)||(24816002-24816080)
chr3 (431-485)||(19882091-19882145)
chr3 (412-485)||(53027713-53027786)
chr3 (431-478)||(31685171-31685218)
chr3 (406-485)||(53352716-53352795)
chr3 (431-473)||(2550035-2550077)
chr3 (433-499)||(17681839-17681905)
chr3 (431-485)||(37982436-37982490)
chr3 (431-485)||(53973266-53973320)
chr3 (412-485)||(12538597-12538670)
[»] scaffold0003 (2 HSPs)
scaffold0003 (256-406)||(36755-36903)
scaffold0003 (262-406)||(42943-43087)
[»] chr6 (3 HSPs)
chr6 (262-406)||(27444274-27444418)
chr6 (281-322)||(4660117-4660158)
chr6 (431-485)||(33045411-33045465)
[»] chr2 (5 HSPs)
chr2 (421-511)||(24454575-24454665)
chr2 (431-485)||(12741775-12741829)
chr2 (431-485)||(23348960-23349014)
chr2 (431-484)||(18355293-18355346)
chr2 (433-509)||(997882-997958)
[»] chr5 (5 HSPs)
chr5 (406-507)||(22004412-22004513)
chr5 (431-485)||(9043889-9043943)
chr5 (431-485)||(22009508-22009562)
chr5 (431-485)||(30442527-30442581)
chr5 (431-485)||(7473469-7473523)
[»] scaffold0096 (1 HSPs)
scaffold0096 (412-485)||(27496-27569)
[»] scaffold0475 (1 HSPs)
scaffold0475 (281-322)||(7415-7456)
[»] scaffold0596 (1 HSPs)
scaffold0596 (431-485)||(741-795)
[»] scaffold0045 (1 HSPs)
scaffold0045 (431-485)||(11614-11668)
[»] chr1 (2 HSPs)
chr1 (340-406)||(7608113-7608179)
chr1 (340-406)||(31771101-31771167)
[»] scaffold0035 (1 HSPs)
scaffold0035 (431-479)||(35156-35204)
[»] chr4 (1 HSPs)
chr4 (431-485)||(29863341-29863395)


Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Complemental strand, 5663128 - 5662624
Alignment:
Q  7 agatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaaca 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5663128 agatacaccataaacaatgaattcaatcttgctaatacaattacctggatgcacttgtatagaataatcattcaaccgtgtttttccgttttattgaaca 5663029  T
Q  107 cggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggg 206  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5663028 cggatatgggcgtatttgggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttacagagaaagggg 5662929  T
Q  207 gagtggacggtgtgcgatgggaagaaggtgagcgagagaaagtgggtttagatggggaatcgtagaaagatggagagagagaggagggttaggtcagagc 306  Q
    ||||||||||||||||||||| |||| | | ||||||||||| ||||  ||||||||||||  ||| ||||||||||  |||||||||||||||||||||    
T  5662928 gagtggacggtgtgcgatggggagaatgggtgcgagagaaagggggtggagatggggaatcacagagagatggagag--agaggagggttaggtcagagc 5662831  T
Q  307 catggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5662830 catggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaacttgaatttgaattgtg 5662731  T
Q  407 gcatggggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaa 506  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5662730 gcatggggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaa 5662631  T
Q  507 aaaatct 513  Q
    |||||||    
T  5662630 aaaatct 5662624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 14678001 - 14678055
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  14678001 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 14678055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 27541539 - 27541593
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  27541539 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 27541593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 5657912 - 5657858
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| || ||||||||||||||| |||||    
T  5657912 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 5657858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 11649206 - 11649523
Alignment:
Q  7 agatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaaca 106  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||    
T  11649206 agatacaccgtcaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttcttcctttttagtgaaca 11649305  T
Q  107 cggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggg 206  Q
    |||||  ||||||||||          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11649306 cggat--gggcgtattt----------ggatatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttacagagaaagggg 11649393  T
Q  207 gagtggacggtgtgcgatgggaagaaggtgagcgagagaaagtgggtttagatggggaatcgtagaaagatggagagagagaggagggttaggtcagagc 306  Q
    |||||||||||| |||||||| |||| | | |||||||||||  |||  ||||||||||||    | |||||  |||||| ||||||||||||||| |||    
T  11649394 gagtggacggtg-gcgatggggagaatgggtgcgagagaaaggcggtggagatggggaatc----atagatg--gagagaaaggagggttaggtcaaagc 11649486  T
Q  307 catggttcgcaatgagatggatatgcaacactgtatt 343  Q
    |||||||  ||||||||||||||||||||| ||||||    
T  11649487 catggtttccaatgagatggatatgcaacattgtatt 11649523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 22007772 - 22007672
Alignment:
Q  7 agatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaaca 106  Q
    ||||||||||  ||||||||||||| ||||  ||||||| ||| |||||||||| ||||||||||||||||||||| ||||| | || ||||| ||||||    
T  22007772 agatacaccgccaacaatgaattcagtcttcgtaatacacttatctggatgcacctgtattgaataatcattcaacagtgttcttcctttttactgaaca 22007673  T
Q  107 c 107  Q
    |    
T  22007672 c 22007672  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 22007619 - 22007561
Alignment:
Q  141 gatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagag 199  Q
    |||| |||||||||||| ||| |||||||||||||||||||||||| ||||||| ||||    
T  22007619 gatacagatgtagaagcggaagccgagaggaagaagtggaagaatcgcgatttacagag 22007561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 1262229 - 1262175
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  1262229 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 1262175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 43071362 - 43071416
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  43071362 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 43071416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 48849787 - 48849835
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatc 479  Q
    |||||||| |||||||| ||||||| |||| ||||||||||||||||||    
T  48849787 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 48849835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 479
Target Start/End: Original strand, 26909961 - 26910009
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatc 479  Q
    |||||||| |||||||| ||||||| |||| |||||||||||| |||||    
T  26909961 tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatc 26910009  T

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Target: chr3 (Bit Score: 161; Significance: 1e-85; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 52131367 - 52131068
Alignment:
Q  7 agatacaccgtaaacaatgaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttttcccgttttattgaaca 106  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| ||||||    
T  52131367 agatacaccgtcaataataaattcaatcttgctaatacaattacctggatgcacttgtattgaataatcattcaaccgtgttct-tcgttttactgaaca 52131269  T
Q  107 cggatatgggcgtatttaggcaaatttggaaatggatatagatgtagaagcagaacccgagaggaagaagtggaagaatcacgatttatagagaaagggg 206  Q
    |||  |||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |   | ||    
T  52131268 cgg--atgggcgtatttgggcgaatttggatatggatatagatgtagaagcataacccgagaggaagaagtggaagaatcacgatttacag-ggtggcgg 52131172  T
Q  207 gagtggacggtgtgcgatgggaagaaggtgagcgagagaaagtgggtttagatggggaatcgtagaaagatggagagagagaggagggttaggtcagagc 306  Q
    || ||||||||| |||||||| |||| | | || |||||||| ||||  ||||||||||||||||| |||||  ||||||||||||||||||||||||||    
T  52131171 gactggacggtg-gcgatggggagaatgggtgcaagagaaagggggtggagatggggaatcgtagagagatg--gagagagaggagggttaggtcagagc 52131075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 406
Target Start/End: Complemental strand, 31688153 - 31688029
Alignment:
Q  282 agagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgc 381  Q
    ||||| || ||||||||||||||||||| |||  |||| |||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||||    
T  31688153 agagaaagaagggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaaccgataacattaattatttgtcatttacaatgc 31688054  T
Q  382 acggtaaactttaatttgaattgtg 406  Q
    || |||||||| |||||||||||||    
T  31688053 accgtaaacttgaatttgaattgtg 31688029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 31896714 - 31896838
Alignment:
Q  282 agagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgc 381  Q
    ||||| || ||||||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| |||||||||||||||||    
T  31896714 agagaaagaagggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgc 31896813  T
Q  382 acggtaaactttaatttgaattgtg 406  Q
    || |||||||| |||||||||||||    
T  31896814 acagtaaacttgaatttgaattgtg 31896838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 31912423 - 31912547
Alignment:
Q  282 agagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgc 381  Q
    ||||| || ||||||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||||||| |||||||||||||||||    
T  31912423 agagaaagaagggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattaattatttgtcatttacaatgc 31912522  T
Q  382 acggtaaactttaatttgaattgtg 406  Q
    || |||||||| |||||||||||||    
T  31912523 acagtaaacttgaatttgaattgtg 31912547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 282 - 406
Target Start/End: Original strand, 31946071 - 31946195
Alignment:
Q  282 agagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaacattaattgtttgtcatttacaatgc 381  Q
    ||||| || ||||||||||||||||||| |||  |||| |||||||||||||||||| |||||||||  | ||||||| ||| |||||||||||||||||    
T  31946071 agagaaagaagggttaggtcagagccattgtttccaataagatggatatgcaacactttattggaaatcgataacattcattatttgtcatttacaatgc 31946170  T
Q  382 acggtaaactttaatttgaattgtg 406  Q
    || |||||||| |||||||||||||    
T  31946171 acagtaaacttgaatttgaattgtg 31946195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 449 - 509
Target Start/End: Original strand, 47763913 - 47763973
Alignment:
Q  449 tgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 509  Q
    ||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||    
T  47763913 tgagatgaatgcctagccagatgatttgatccaacggacctccttgattggcgcctaaaaa 47763973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 485
Target Start/End: Original strand, 24761853 - 24761932
Alignment:
Q  406 ggcatggggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||||||||  ||||| ||||||| |||| |||||||| ||||||| ||||  ||||||||||||||||| |||||    
T  24761853 ggcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24761932  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 24816080 - 24816002
Alignment:
Q  407 gcatggggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    ||||||||||||  ||||| ||||||| |||| |||||||| ||||||| ||||  ||||||||||||||||| |||||    
T  24816080 gcatggggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 24816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 19882091 - 19882145
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  19882091 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 19882145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 53027713 - 53027786
Alignment:
Q  412 gggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||  ||||| ||||||| |||| |||||||| ||||||| ||||  ||||||||||||||||| |||||    
T  53027713 gggaaataaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacgg 53027786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 31685218 - 31685171
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagat 478  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  31685218 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagat 31685171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 485
Target Start/End: Original strand, 53352716 - 53352795
Alignment:
Q  406 ggcatggggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||| ||||||  ||||| ||||||| ||||||||||||| ||||||| |  |  ||||||||||||||||| |||||    
T  53352716 ggcatgaggaaataaaagtttgaagtcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacgg 53352795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 473
Target Start/End: Complemental strand, 2550077 - 2550035
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgat 473  Q
    ||||||||||||||||| ||||||| |||| ||||||||||||    
T  2550077 tcagattaaatcaaaggatgagatgcatgcttagccaaatgat 2550035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 499
Target Start/End: Complemental strand, 17681905 - 17681839
Alignment:
Q  433 agattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacggacctccttgattgg 499  Q
    |||||| |||||||| ||||||| |||| || ||||||||||||||| ||||| || ||||| ||||    
T  17681905 agattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttgtttgg 17681839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 37982490 - 37982436
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| || ||||| ||||||| |||| |||||||||||||||||| |||||    
T  37982490 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 37982436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 53973266 - 53973320
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| | || |||||||||||||||||| |||||    
T  53973266 tcagattagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacgg 53973320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 12538597 - 12538670
Alignment:
Q  412 gggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    ||||| || ||||| ||||| | |||| |||||||| || |||| |||| |||||||||||||||||| |||||    
T  12538597 gggaattgaaagtttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacgg 12538670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 256 - 406
Target Start/End: Original strand, 36755 - 36903
Alignment:
Q  256 agatggggaatcgtagaaagatggagagagagaggagggttaggtcagagccatggttcgcaatgagatggatatgcaacactgtattggaaacagttaa 355  Q
    ||||| ||||||||||| ||||||||||| ||  |||||||| ||||||||||| |||  |||||||||||||||||||||||||||||||||| | |||    
T  36755 agatgaggaatcgtagagagatggagagaaag--gagggttaagtcagagccattgtttccaatgagatggatatgcaacactgtattggaaaccgataa 36852  T
Q  356 cattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 406  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||||||    
T  36853 cattaattatttgtcatttacaatgcactgtaaacttgaatttgaattgtg 36903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 262 - 406
Target Start/End: Original strand, 42943 - 43087
Alignment:
Q  262 ggaatcgtagaaagatggagagagagaggagggttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacatta 360  Q
    ||||||||||| ||||||||||| ||  |||||||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||    
T  42943 ggaatcgtagagagatggagagaaag--gagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacatta 43040  T
Q  361 attgtttgtc-atttacaatgcacggtaaactttaatttgaattgtg 406  Q
    | | |||||| ||||||||||||| |||||||| |||||||||||||    
T  43041 actatttgtcaatttacaatgcaccgtaaacttgaatttgaattgtg 43087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 262 - 406
Target Start/End: Complemental strand, 27444418 - 27444274
Alignment:
Q  262 ggaatcgtagaaagatggagagagagaggagggttaggtcagagccatggtt-cgcaatgagatggatatgcaacactgtattggaaacagttaacatta 360  Q
    ||||||||||| ||||||||||| ||  |||||||||||||||||||| ||| | |||||| |||||||||||||||||||||  |||| | ||||||||    
T  27444418 ggaatcgtagagagatggagagaaag--gagggttaggtcagagccattgtttcccaatgaaatggatatgcaacactgtattcaaaaccgataacatta 27444321  T
Q  361 attgtttgtca-tttacaatgcacggtaaactttaatttgaattgtg 406  Q
    | | ||||||| |||||||||||| |||||||| |||||||||||||    
T  27444320 actatttgtcaatttacaatgcaccgtaaacttgaatttgaattgtg 27444274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 4660117 - 4660158
Alignment:
Q  281 gagagagaggagggttaggtcagagccatggttcgcaatgag 322  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  4660117 gagagagaggagggttaggtcagagccatggttcccaatgag 4660158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 33045411 - 33045465
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| || ||||||||||||||| |||||    
T  33045411 tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 33045465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 421 - 511
Target Start/End: Complemental strand, 24454665 - 24454575
Alignment:
Q  421 aagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaaat 511  Q
    ||||| |||||||||||| |||||||| ||||||||||| | ||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  24454665 aagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttgtttggcgcctaaaaaat 24454575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 12741829 - 12741775
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  12741829 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 12741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 23348960 - 23349014
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  23348960 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 23349014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 431 - 484
Target Start/End: Original strand, 18355293 - 18355346
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacg 484  Q
    |||||||| || ||||| ||||||| |||| |||||||||||||||||| ||||    
T  18355293 tcagattagattaaaggatgagatgcatgcttagccaaatgatgagatccaacg 18355346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 509
Target Start/End: Complemental strand, 997958 - 997882
Alignment:
Q  433 agattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgcctaaaaa 509  Q
    |||||| || ||||| |||||||||||| ||| || |||||  |||| ||||| | ||||| |||||||||||||||    
T  997958 agattagatgaaaggatgagatgaatgcttagtcagatgatttgatcaaacggccatccttaattggcgcctaaaaa 997882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 406 - 507
Target Start/End: Original strand, 22004412 - 22004513
Alignment:
Q  406 ggcatggggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacggacctccttgattggcgccta 505  Q
    |||||||||||||| || || ||||| | |||| |||||||| ||| ||||||||  ||||||||||||||||| |||||||| ||||||||||||||||    
T  22004412 ggcatggggaaatgaaactttgaagtgacattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttgattggcgccta 22004511  T
Q  506 aa 507  Q
    ||    
T  22004512 aa 22004513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 9043943 - 9043889
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  9043943 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 9043889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 22009508 - 22009562
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  22009508 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 22009562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 30442527 - 30442581
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  30442527 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 30442581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 7473469 - 7473523
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||| ||||||||||||| |||||    
T  7473469 tcagattagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacgg 7473523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 27569 - 27496
Alignment:
Q  412 gggaaatgcaagttagaagtcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| ||||| ||||||| |||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  27569 gggaaatgaaagtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 27496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 7415 - 7456
Alignment:
Q  281 gagagagaggagggttaggtcagagccatggttcgcaatgag 322  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  7415 gagagagaggagggttaggtcagagccatggttcccaatgag 7456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Complemental strand, 795 - 741
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| |||| |||||||||||||||||| |||||    
T  795 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacgg 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 11614 - 11668
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    ||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||    
T  11614 tcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacgg 11668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 7608113 - 7608179
Alignment:
Q  340 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 406  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| |||||||| || ||||||||||    
T  7608113 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaacttgaacttgaattgtg 7608179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 31771101 - 31771167
Alignment:
Q  340 tattggaaacagttaacattaattgtttgtcatttacaatgcacggtaaactttaatttgaattgtg 406  Q
    ||||||||||   ||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||    
T  31771101 tattggaaaccaataacattaattatttgtcatttacaatacactgtaaatttgaacttgaattgtg 31771167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 431 - 479
Target Start/End: Complemental strand, 35204 - 35156
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatc 479  Q
    |||||||| |||||||| ||||||| |||| ||||||||||||||||||    
T  35204 tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatc 35156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 485
Target Start/End: Original strand, 29863341 - 29863395
Alignment:
Q  431 tcagattaaatcaaaggctgagatgaatgcctagccaaatgatgagatctaacgg 485  Q
    |||||||| |||||||| ||||||| ||||  ||||||||||||||||| |||||    
T  29863341 tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacgg 29863395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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