View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15134_high_8 (Length: 346)

Name: NF15134_high_8
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15134_high_8
NF15134_high_8
[»] chr5 (8 HSPs)
chr5 (12-322)||(10214468-10214779)
chr5 (180-328)||(10100936-10101084)
chr5 (182-328)||(9678771-9678917)
chr5 (180-323)||(10104739-10104882)
chr5 (25-273)||(10107382-10107647)
chr5 (182-273)||(9679048-9679139)
chr5 (182-273)||(9679270-9679361)
chr5 (60-125)||(10104665-10104727)
[»] chr7 (6 HSPs)
chr7 (180-328)||(1470500-1470648)
chr7 (278-311)||(8959341-8959374)
chr7 (267-328)||(34906383-34906444)
chr7 (267-328)||(34913881-34913942)
chr7 (277-305)||(33032674-33032702)
chr7 (277-305)||(33120234-33120262)
[»] chr1 (1 HSPs)
chr1 (179-318)||(35121792-35121931)
[»] chr4 (2 HSPs)
chr4 (275-319)||(7600996-7601040)
chr4 (187-301)||(16622651-16622765)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 10214779 - 10214468
Alignment:
Q  12 cacagacaacaagaacctcccatgtccactttgtgaaccaaggtaaaaacattatcattcccttctcaaaaaatcatatttattttttatggtgtgtttt 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10214779 cacaaacaacaagaacctcccatgtccactttgtgaaccaaggtaaaaacattatcattcccttctcaaaaaatcatatttattttttatggtgtgtttt 10214680  T
Q  112 cttgtaaaataaaaaagtgcaatgtagaacttgggggtttgtcgcaaaaaacatga-taaaaagggggtttttgagtctgtcagacaaccatgcgaccat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | |||||| ||||||||||||||||| ||||||    
T  10214679 cttgtaaaataaaaaagtgcaatgtagaacttgggggtttgtcgcaaaaaacatgattaaaaaaggtggttttgaatctgtcagacaaccatgtgaccat 10214580  T
Q  211 cccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccgttaatcacgctctgatcacacggtcatgatt 310  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||  | |    
T  10214579 cccggttagttgaactaggccaagaacgatcatctacagctgaagatgatgcacacatcatcctggccgttaatcacgctctgatcacacggtcacaact 10214480  T
Q  311 catccaccagac 322  Q
    |||| |||||||    
T  10214479 catctaccagac 10214468  T

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Target: chr5; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 10100936 - 10101084
Alignment:
Q  180 ttttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccg 279  Q
    ||||||||||||||||||||| || ||||||| | || |||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||    
T  10100936 ttttgagtctgtcagacaaccgtgtgaccatctcagtcagttgaactaggccgagaacgatcatctacagctgaagatgatgcacacatcatcctggccg 10101035  T
Q  280 ttaatcacgctctgatcacacggtcatgattcatccaccagacgcatgt 328  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  10101036 ttaatcacgctctgatcacacggtcatggttcatccaccagacgtatgt 10101084  T

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Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 182 - 328
Target Start/End: Complemental strand, 9678917 - 9678771
Alignment:
Q  182 ttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccgtt 281  Q
    ||||||||||||||||||| || ||||||| |||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||  ||||||    
T  9678917 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcctagccgtt 9678818  T
Q  282 aatcacgctctgatcacacggtcatgattcatccaccagacgcatgt 328  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9678817 aatcacgctctgatcacacagtcatgattcatccaccagacgtatgt 9678771  T

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Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 180 - 323
Target Start/End: Original strand, 10104739 - 10104882
Alignment:
Q  180 ttttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccg 279  Q
    |||| ||||||  |||||||| || ||||||| | || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10104739 ttttcagtctgaaagacaaccgtgtgaccatctcagtcagttgaactaagccaagaacgatcatctacagctgaagatgatgcacacatcatccaggccg 10104838  T
Q  280 ttaatcacgctctgatcacacggtcatgattcatccaccagacg 323  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  10104839 ttaatcacgctctgatcacacggtcatggttcatccaccagacg 10104882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 25 - 273
Target Start/End: Original strand, 10107382 - 10107647
Alignment:
Q  25 aacctcccatgtccactttgtgaaccaaggtaaaaacattatcattcccttctcaaaaaatcatatttattttttatggtgtgttttcttgtaaaataaa 124  Q
    ||||||| |||||||||||||||||| |||| ||  ||||||||||| ||| || ||||||||||||||||||| |||||||||||| |||||| | |||    
T  10107382 aacctccaatgtccactttgtgaacctaggttaa--cattatcattctcttttccaaaaatcatatttattttt-atggtgtgttttattgtaaca-aaa 10107477  T
Q  125 aaagtgcaatgtagaacttg-------------ggggtttgtcgcaaaaaacatgataaaaag--------ggggtttttgagtctgtcagacaaccatg 203  Q
     ||||||||||||| |||||             ||| |  ||| |||||| |||||||||||         |||| ||||||||||||||||||||||||    
T  10107478 gaagtgcaatgtagtacttgtacatgattatacgggatgagtctcaaaaatcatgataaaaaaaggaaaaagggggttttgagtctgtcagacaaccatg 10107577  T
Q  204 cgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatcc 273  Q
     |||||||||||  |||||||| ||| |  ||||||||| ||||||| ||||||||||||||||||||||    
T  10107578 tgaccatcccggccagttgaacaaggacgggaacgatcacctacagctgaagatgatgcacacatcatcc 10107647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 9679139 - 9679048
Alignment:
Q  182 ttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatcc 273  Q
    ||||||||||||||||||| || ||||||| |||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  9679139 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcc 9679048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 273
Target Start/End: Complemental strand, 9679361 - 9679270
Alignment:
Q  182 ttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatcc 273  Q
    ||||||||||||||||||| || ||||||| |||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||    
T  9679361 ttgagtctgtcagacaaccgtgtgaccatctcggtcagttgaactaggccgagaacgatcatctacagctgtagatgatgcacacatcatcc 9679270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 10104665 - 10104727
Alignment:
Q  60 acattatcattcccttctcaaaaaatcatatttattttttatggtgtgttttcttgtaaaataaaa 125  Q
    ||||||||||||||||||||||   |||||||| |||||||||||| ||||| |||||||| ||||    
T  10104665 acattatcattcccttctcaaa---tcatatttgttttttatggtgcgttttgttgtaaaaaaaaa 10104727  T

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Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 180 - 328
Target Start/End: Original strand, 1470500 - 1470648
Alignment:
Q  180 ttttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccg 279  Q
    ||||||||||||||||||||| || ||||||| | || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||    
T  1470500 ttttgagtctgtcagacaaccgtgtgaccatctcagtcagttgaactaggccaagaacgatcatctacagctgaagatgatgcacacatcatcatggccg 1470599  T
Q  280 ttaatcacgctctgatcacacggtcatgattcatccaccagacgcatgt 328  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  1470600 ttaatcatgctctgatcacacggtcatggttcatccaccagacgtatgt 1470648  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Complemental strand, 8959374 - 8959341
Alignment:
Q  278 cgttaatcacgctctgatcacacggtcatgattc 311  Q
    ||||||||||||||||||| ||||||||||||||    
T  8959374 cgttaatcacgctctgatctcacggtcatgattc 8959341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 34906444 - 34906383
Alignment:
Q  267 atcatccaggccgttaatcacgctctgatcacacggtcatgattcatccaccagacgcatgt 328  Q
    |||||| | ||||||||||||||||||||| ||||||| | |||||||  ||||||| ||||    
T  34906444 atcatctaagccgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgt 34906383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 34913881 - 34913942
Alignment:
Q  267 atcatccaggccgttaatcacgctctgatcacacggtcatgattcatccaccagacgcatgt 328  Q
    |||||| | ||||||||||||||||||||| ||||||| | |||||||  ||||||| ||||    
T  34913881 atcatctaagccgttaatcacgctctgatcgcacggtcttcattcatcatccagacgtatgt 34913942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 33032674 - 33032702
Alignment:
Q  277 ccgttaatcacgctctgatcacacggtca 305  Q
    |||||||||||||||||||||||||||||    
T  33032674 ccgttaatcacgctctgatcacacggtca 33032702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 33120234 - 33120262
Alignment:
Q  277 ccgttaatcacgctctgatcacacggtca 305  Q
    |||||||||||||||||||||||||||||    
T  33120234 ccgttaatcacgctctgatcacacggtca 33120262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 179 - 318
Target Start/End: Original strand, 35121792 - 35121931
Alignment:
Q  179 tttttgagtctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggcc 278  Q
    ||||| |||||||||||||||  || |||||||||| | ||||||||||| |  |||||||||||||||| | ||||| |||||||||||||||  |  |    
T  35121792 ttttttagtctgtcagacaactgtgtgaccatcccgatcagttgaactagactgagaacgatcatctacaactgaagacgatgcacacatcatcatgatc 35121891  T
Q  279 gttaatcacgctctgatcacacggtcatgattcatccacc 318  Q
    |||||||| ||| |||||||||||||||| ||||||||||    
T  35121892 gttaatcatgctttgatcacacggtcatggttcatccacc 35121931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 7601040 - 7600996
Alignment:
Q  275 ggccgttaatcacgctctgatcacacggtcatgattcatccacca 319  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  7601040 ggccgttaatcactctctgatctcacggtcatgattcatccacca 7600996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 301
Target Start/End: Original strand, 16622651 - 16622765
Alignment:
Q  187 tctgtcagacaaccatgcgaccatcccggttagttgaactaggccaagaacgatcatctacagcagaagatgatgcacacatcatccaggccgttaatca 286  Q
    ||||||||||||||||| |||||||||  | ||||||  |||||| |||||||| ||||||| |  ||| ||||  | |||| |||| || ||||||| |    
T  16622651 tctgtcagacaaccatgtgaccatccctatcagttgatataggccgagaacgataatctacaactaaagttgatatatacattatcctggtcgttaatta 16622750  T
Q  287 cgctctgatcacacg 301  Q
    |||| ||||||||||    
T  16622751 cgctttgatcacacg 16622765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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