View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15134_high_9 (Length: 330)
Name: NF15134_high_9
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 70 - 313
Target Start/End: Complemental strand, 29090996 - 29090752
Alignment:
| Q |
70 |
caatggtagtggggtgatcctcctccatttatgtgaaaagtactcacatttttctccatatttactcttgcaaacaataataatacctctcattcataat |
169 |
Q |
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| T |
29090996 |
caatggtagtggggtgatcctcctccatttatgtgaaaagtactcacatttttctccatatttactcttgcaaacaataataatacctctcattcataat |
29090897 |
T |
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| Q |
170 |
cagaagcttccaaaaatccaactcatcatacatgtgtaaagcagcagtagctgaaattgtggaacaannnnnnng-tagcaaaacaattatcaacacaaa |
268 |
Q |
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| T |
29090896 |
cagaagcttccaaaaatccaactcatcatacatgtgtaaagcagcagtagctgaaattgtggaacaatttttttgttagcaaaacaattatcaacacaaa |
29090797 |
T |
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| Q |
269 |
agaggaagaagaaattgacacaaaggtagcctgcatggtgctcat |
313 |
Q |
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| T |
29090796 |
agaggaagaagaaattgacacaaaggtagcctgcatggtgctcat |
29090752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 29087681 - 29087637
Alignment:
| Q |
261 |
aacacaaaagaggaagaagaaattgacacaaaggtagcctgcatg |
305 |
Q |
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| T |
29087681 |
aacacaaaagaggaagaagaaattgacacaatggtagcttgcatg |
29087637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 29085219 - 29085111
Alignment:
| Q |
121 |
ttctccatatttactcttgcaaacaataataatacctctcattcataatcagaagcttccaaaaatccaactc-atcatacatgtgtaaagcagcagtag |
219 |
Q |
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| T |
29085219 |
ttctccatatttactctttcaaacaataataataccactcacac-taacc---accttccaaaaatccaactcaatca-acatgtgtaaagtagcactaa |
29085125 |
T |
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| Q |
220 |
ctgaaattgtggaa |
233 |
Q |
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| T |
29085124 |
ctgaaatagtggaa |
29085111 |
T |
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