View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15134_low_1 (Length: 750)
Name: NF15134_low_1
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_low_1 |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: scaffold0065 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 16 - 732
Target Start/End: Complemental strand, 64163 - 63450
Alignment:
| Q |
16 |
atgaatgttgtatctagaggattttatttgaatcaaagtgtcatccagaaataccaagtatagtagcaggtatctaactgggaagatactacttagaact |
115 |
Q |
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| T |
64163 |
atgaatgttgtatctagaggattttatttgactcgatgtgtcatctagaaataccaaggatagtagcaggtttctaagtgggaagatactacttggaaca |
64064 |
T |
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| Q |
116 |
ggaattgaggttacctgaacacaacttagtcttgaagttcgatgagttaaaactcgatgtctcgtgactgatgtaaagttacttggattctagtaaggaa |
215 |
Q |
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| T |
64063 |
ggaattgaggttccccgaacaaaacttagtcttgaagttcggtgagttaaaactcgatgtatcgtgactgttgtaaagttacgtggattctagtaaggaa |
63964 |
T |
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| Q |
216 |
taagaaattcccaagttataggagacaagttgtggacgacaagttaagacaaaatatcatagacccttaagattatatattcgaacccccgagaattctg |
315 |
Q |
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| T |
63963 |
taagaaattcccaagttataggagacacgttgtggacgacatgttaagacaaaacatcatagacccttaagattatc----cgaacccccgagaattctg |
63868 |
T |
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| Q |
316 |
cag-agaagtggaagtagatatctacagtttctaaagtagtatacctcgtattcagaaacaacgagacatgaggcagaagcaattcttatacttgtaaca |
414 |
Q |
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| T |
63867 |
cagtagaagtggaagcaaatatctacagttgctaaagtagtatacctcgtattcagaaagaacgagacatgaggaagaagcaattcttatacttgtaaca |
63768 |
T |
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| Q |
415 |
tcggaatcgaagacaaggactcaccgatagcatcagaggtggattaacatccggaagagcgagaatgtttaggaaaaataaggacgaatttatgttgtta |
514 |
Q |
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| T |
63767 |
ttggaatcgaagacaaggactcaccgatagcatcagaggtggattaacatccggaagagcgagaatgtttaggaaaagtacggacgaatttatgttgtca |
63668 |
T |
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| Q |
515 |
gaaaatgttatgtagataacagaggaaatcttagggaaattccgaagaagtgtgcgaagcattgtgtgatcgtaagtataaaaccctttcatgtggggaa |
614 |
Q |
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| T |
63667 |
gaaaatgttatgcagataatggaggaaaacgtagagaaattccgaagaagtgtgcgaatcatggtgtgatcgtaagtataaaaccctgtcatgtggggaa |
63568 |
T |
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| Q |
615 |
aattccagaggtaagaatttatcgacaacacgcatggtgcgagaaaaccacttgtagggagagaatattcaacgaaagataagataaactggttgtcatg |
714 |
Q |
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| T |
63567 |
aattccagaggtaagaatttatcgacaacacgcgtggtgcgagaaaaccacttgtagggagagaatattcaacgaaagataagatcaactcgttgtcatg |
63468 |
T |
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| Q |
715 |
agaaagaattgtacttgt |
732 |
Q |
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| T |
63467 |
agaaagaattgcacttgt |
63450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 5169545 - 5169428
Alignment:
| Q |
148 |
tgaagttcgatgagttaaaactcgatgtctcgtgactgatgtaaagttacttggattctagtaaggaataagaaattcccaagttataggagacaagttg |
247 |
Q |
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||||||||| |||||| ||||||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| ||| |
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| T |
5169545 |
tgaagttcggtgagtttaaactcgatgtattgtgattgatgtaaagttacttggattctagtaaggaggaagaaattcttaagttataagagacgcgtta |
5169446 |
T |
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| Q |
248 |
tggacgacaagttaagac |
265 |
Q |
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| T |
5169445 |
tggtcgacaagttaagac |
5169428 |
T |
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