View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15134_low_12 (Length: 250)

Name: NF15134_low_12
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15134_low_12
NF15134_low_12
[»] chr4 (11 HSPs)
chr4 (9-114)||(3672361-3672465)
chr4 (155-250)||(3445570-3445665)
chr4 (9-114)||(6112717-6112820)
chr4 (9-114)||(28093096-28093200)
chr4 (9-114)||(7217852-7217956)
chr4 (9-114)||(44275793-44275896)
chr4 (23-114)||(49243916-49244005)
chr4 (28-114)||(21390956-21391040)
chr4 (23-113)||(35545013-35545102)
chr4 (116-152)||(3445690-3445726)
chr4 (47-114)||(46192484-46192550)
[»] chr5 (10 HSPs)
chr5 (10-114)||(13347216-13347319)
chr5 (9-114)||(39371014-39371118)
chr5 (9-114)||(2237363-2237467)
chr5 (9-98)||(9408054-9408143)
chr5 (9-114)||(14831631-14831735)
chr5 (9-114)||(40887942-40888046)
chr5 (9-114)||(42683686-42683790)
chr5 (10-114)||(31800646-31800748)
chr5 (9-114)||(1815620-1815720)
chr5 (9-100)||(27553387-27553477)
[»] chr3 (11 HSPs)
chr3 (9-91)||(22894767-22894849)
chr3 (9-114)||(48200772-48200876)
chr3 (9-113)||(36749493-36749596)
chr3 (9-114)||(34749898-34750002)
chr3 (9-114)||(36370338-36370442)
chr3 (9-114)||(44000076-44000180)
chr3 (9-114)||(21559648-21559752)
chr3 (9-114)||(46111944-46112048)
chr3 (9-114)||(51339784-51339887)
chr3 (14-114)||(29472901-29472999)
chr3 (15-114)||(30735496-30735594)
[»] chr7 (17 HSPs)
chr7 (9-114)||(26972203-26972307)
chr7 (9-114)||(34108513-34108617)
chr7 (9-114)||(36346565-36346668)
chr7 (9-113)||(30887787-30887890)
chr7 (9-114)||(28307495-28307599)
chr7 (9-114)||(45782660-45782764)
chr7 (16-114)||(29953572-29953669)
chr7 (9-114)||(7699883-7699987)
chr7 (9-114)||(7700081-7700185)
chr7 (9-114)||(7700279-7700383)
chr7 (9-114)||(7700477-7700581)
chr7 (9-114)||(34828152-34828255)
chr7 (9-114)||(5811164-5811267)
chr7 (9-114)||(31148377-31148480)
chr7 (9-113)||(21807324-21807426)
chr7 (23-114)||(42220964-42221053)
chr7 (39-114)||(13108264-13108337)
[»] scaffold0062 (1 HSPs)
scaffold0062 (9-114)||(6805-6909)
[»] chr8 (10 HSPs)
chr8 (9-114)||(42162685-42162789)
chr8 (9-100)||(44081867-44081958)
chr8 (9-114)||(31318892-31318996)
chr8 (9-114)||(10203751-10203855)
chr8 (10-114)||(43186115-43186217)
chr8 (15-114)||(12665438-12665536)
chr8 (9-114)||(18184640-18184743)
chr8 (9-100)||(30432426-30432516)
chr8 (9-124)||(36189303-36189415)
chr8 (20-114)||(33726110-33726202)
[»] chr1 (4 HSPs)
chr1 (9-113)||(39249864-39249967)
chr1 (9-114)||(2509111-2509215)
chr1 (12-114)||(34307138-34307239)
chr1 (9-114)||(46901735-46901839)
[»] chr2 (7 HSPs)
chr2 (9-114)||(33732656-33732759)
chr2 (9-114)||(44958200-44958304)
chr2 (9-114)||(16089909-16090011)
chr2 (9-114)||(37498863-37498969)
chr2 (9-92)||(14573082-14573165)
chr2 (9-112)||(3830900-3831001)
chr2 (47-119)||(36315686-36315757)
[»] chr6 (6 HSPs)
chr6 (10-119)||(15345655-15345762)
chr6 (9-114)||(3986906-3987009)
chr6 (10-114)||(3118047-3118150)
chr6 (9-114)||(13697655-13697758)
chr6 (9-114)||(24208531-24208634)
chr6 (9-114)||(14023021-14023124)
[»] scaffold0043 (1 HSPs)
scaffold0043 (39-114)||(87163-87236)


Alignment Details
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 3672361 - 3672465
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  3672361 gagatgaaaaagggtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtatct-acctatc 3672459  T
Q  109 tttttc 114  Q
    ||||||    
T  3672460 tttttc 3672465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 3445665 - 3445570
Alignment:
Q  155 agtaccaattaagaataatttaatttattccccacaatcacaaccgattcctatcatatcagccatacnnnnnnncttctcatttttctcttccaa 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  3445665 agtaccaattaagaataatttaatttattccccacaatcacaaccgattcctatcatatcagccatactttttttcttctcatttttctcttccaa 3445570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 6112717 - 6112820
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||  |||||| |||||||    
T  6112717 gagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccctaatacatg-gagtgtacataagaagtgtatgaaaaagagtgtct-acctatc 6112814  T
Q  109 tttttc 114  Q
    ||||||    
T  6112815 tttttc 6112820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 28093200 - 28093096
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||    
T  28093200 gagatgaaaaagggtgatgatatgatgtaaaaatactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaaggatgtct-acctatc 28093102  T
Q  109 tttttc 114  Q
    ||||||    
T  28093101 tttttc 28093096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 7217852 - 7217956
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| ||||||| ||||||||||||||| ||||||| |||||||  ||| |||||||||||||||||||| |||||||||||| ||||| | |||||||    
T  7217852 gagataaaaaagggtgatgatatgatgtaaaattactaaaatacctataacacatgagggtgtacataagaggtgtatgaaaaagggtgt-ttacctatc 7217950  T
Q  109 tttttc 114  Q
    ||||||    
T  7217951 tttttc 7217956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44275793 - 44275896
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| ||||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||||| | |||||    
T  44275793 gagattaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtct-atctatc 44275890  T
Q  109 tttttc 114  Q
    ||||||    
T  44275891 tttttc 44275896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 49243916 - 49244005
Alignment:
Q  23 tgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    ||||||||||||||| ||||||| |||||||||||||||||| | |||||||||||| |||||||||||| | ||||| || ||||||||||    
T  49243916 tgatgatatgatgtaaaattactaaaatacccctaatacatg-gagtgtacataagaggtgtatgaaaaaggatgtct-acatatctttttc 49244005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 21391040 - 21390956
Alignment:
Q  28 atatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    |||||||||| ||||||| |||||||||||| |||||| ||||||||||| | |||||||||||| ||||||| |||||||||||||    
T  21391040 atatgatgtaaaattactaaaatacccctaacacatga-ggtgtacataaaaggtgtatgaaaaagggtgtct-acctatctttttc 21390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 35545013 - 35545102
Alignment:
Q  23 tgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 113  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||| ||||||| ||||||||||||    
T  35545013 tgatgatatgatgtaaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtct-acctatcttttt 35545102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 3445726 - 3445690
Alignment:
Q  116 tataaaaataataaaaggaattaagcattctaatcaa 152  Q
    ||||||| |||||||||||||||||||||||||||||    
T  3445726 tataaaattaataaaaggaattaagcattctaatcaa 3445690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 46192484 - 46192550
Alignment:
Q  47 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaa-ggtgtctgacctatctttttc 114  Q
    ||||||||||  |||||| |||||||||||||| |||||| |||||| ||||||| |||||||||||||    
T  46192484 aaatacccctggtacatg-gggtgtacataagaggtgtatcaaaaaagggtgtct-acctatctttttc 46192550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 13347216 - 13347319
Alignment:
Q  10 agatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatct 109  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  13347216 agatgaaaaagagtgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaagggtgtct-acctatct 13347314  T
Q  110 ttttc 114  Q
    |||||    
T  13347315 ttttc 13347319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 39371014 - 39371118
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  39371014 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatc 39371112  T
Q  109 tttttc 114  Q
    ||||||    
T  39371113 tttttc 39371118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 2237363 - 2237467
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||    
T  2237363 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacttgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatc 2237461  T
Q  109 tttttc 114  Q
    ||||||    
T  2237462 tttttc 2237467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 9408143 - 9408054
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgt 98  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||    
T  9408143 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatatatgggggtgtacataagaagtgtatgaaaaatggtgt 9408054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 14831631 - 14831735
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||| |  ||||||||||||||||||||||||||| ||||| | |||||||    
T  14831631 gagatgaaaaagggtgatgatatgatgtaaaattattcaaatacccctaatacgtaggggtgtacataagaagtgtatgaaaaagggtgt-ttacctatc 14831729  T
Q  109 tttttc 114  Q
    ||||||    
T  14831730 tttttc 14831735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 40888046 - 40887942
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| || |||||||||||| ||||||| ||||||| |||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  40888046 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacctctaatagatgggggtgtacataagaggtgtatgaaaaagggtgtct-acctatc 40887948  T
Q  109 tttttc 114  Q
    ||||||    
T  40887947 tttttc 40887942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 42683686 - 42683790
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||| | ||||| | |||||    
T  42683686 gagatgaaaaaggatggtgatatgatgtaaaattactaaaatacccctaatatatgggggtgtacataagaggtgtatgaaaaaggatgtct-atctatc 42683784  T
Q  109 tttttc 114  Q
    ||||||    
T  42683785 tttttc 42683790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 31800646 - 31800748
Alignment:
Q  10 agatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatct 109  Q
    ||||||||| || ||||||||||||||| ||||||| |||||||||||| | ||| ||||||||| |||| |||||||||||| |||||||| |||||||    
T  31800646 agatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtacacaagaggtgtatgaaaaagggtgtctg-cctatct 31800743  T
Q  110 ttttc 114  Q
    |||||    
T  31800744 ttttc 31800748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 1815720 - 1815620
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| || ||||||||||||||| ||||||| |||||||||||| |||| |||||||||||      | ||||||||||||||||| |||||||    
T  1815720 gagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccctaacacat-agggtgtacat---ttctttatgaaaaaaggtgtct-acctatc 1815626  T
Q  109 tttttc 114  Q
    ||||||    
T  1815625 tttttc 1815620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 27553477 - 27553387
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 100  Q
    |||| |||||| | |||| || ||||||| ||||||| |||||| ||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  27553477 gagaagaaaaatggtgattatctgatgtaaaattactaaaatactcctaacacat-agggtgtacataagaggtgtatgaaaaagggtgtct 27553387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 22894767 - 22894849
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaa 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22894767 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaa 22894849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 48200772 - 48200876
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| |||||||||||||| | ||||| |||||||    
T  48200772 gagatgaaaaaggatgatgatatgatgtaaaattactcaaatacccataatacatgggggtgtacataaaaagtgtatgaaaaaggatgtct-acctatc 48200870  T
Q  109 tttttc 114  Q
    ||||||    
T  48200871 tttttc 48200876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 36749493 - 36749596
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||| |||||||    
T  36749493 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggtgtacataaaaagtgtatgaaaaagagtgtct-acctatc 36749591  T
Q  109 ttttt 113  Q
    |||||    
T  36749592 ttttt 36749596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 34750002 - 34749898
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||||||  |||||    
T  34750002 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacataggggtgtacataagaagtgtatgaaaaaggatgtctg-gctatc 34749904  T
Q  109 tttttc 114  Q
    ||||||    
T  34749903 tttttc 34749898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 36370442 - 36370338
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||  || ||| |||||||    
T  36370442 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgagggtgtatataaaaagtgtatgaaaaagagtatct-acctatc 36370344  T
Q  109 tttttc 114  Q
    ||||||    
T  36370343 tttttc 36370338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44000076 - 44000180
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||  |||||| |||||||    
T  44000076 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacctctaatacatgagggcgtacataaaaagtgtatgaaaaagagtgtct-acctatc 44000174  T
Q  109 tttttc 114  Q
    ||||||    
T  44000175 tttttc 44000180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 21559648 - 21559752
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| | ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||| ||||||| | |||||    
T  21559648 gagatgaaaaagggtaatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgaaaaatggtgtct-atctatc 21559746  T
Q  109 tttttc 114  Q
    ||||||    
T  21559747 tttttc 21559752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 46112048 - 46111944
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| || |||| |||| | |||||||||||| ||||||| |||||||    
T  46112048 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaatacatggggatgtatataaaaggtgtatgaaaaatggtgtct-acctatc 46111950  T
Q  109 tttttc 114  Q
    ||||||    
T  46111949 tttttc 46111944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 51339887 - 51339784
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||  |||||||||||| |||||||||||| ||||||| |||||||    
T  51339887 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacctctaacacatga-tgtgtacataagaggtgtatgaaaaagggtgtct-acctatc 51339790  T
Q  109 tttttc 114  Q
    ||||||    
T  51339789 tttttc 51339784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 29472901 - 29472999
Alignment:
Q  14 gaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 113  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||| ||||| |||||| ||||||  |||||||||||| | ||||| ||||||||||||    
T  29472901 gaaaagggatgatgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtgcataagtggtgtatgaaaaaggatgtct-acctatcttttt 29472998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 114
Target Start/End: Complemental strand, 30735594 - 30735496
Alignment:
Q  15 aaaaaggatgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttttt 113  Q
    ||||||| ||||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||||||| ||||||| ||||||||||||    
T  30735594 aaaaagggtgatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatgaaaaagggtgtct-acctatcttttt 30735497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 26972307 - 26972203
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||    
T  26972307 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct-acctatc 26972209  T
Q  109 tttttc 114  Q
    ||||||    
T  26972208 tttttc 26972203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 34108513 - 34108617
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||||||    
T  34108513 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggagtgtacataagaagtgtatgaaaaagggtgt-ttacctatc 34108611  T
Q  109 tttttc 114  Q
    ||||||    
T  34108612 tttttc 34108617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 36346668 - 36346565
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  36346668 gagatgaaaaagg-tgatgatatgatgtaaaattactaaaatacccctaacacatgagggtgtacataagaggtgtatgaaaaagggtgtct-acctatc 36346571  T
Q  109 tttttc 114  Q
    ||||||    
T  36346570 tttttc 36346565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 30887787 - 30887890
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||| || ||||    
T  30887787 gagatgaaaaagggtgatgatatgatgtaaaattacttaaatacctctaatacatg-gggtgtatataagaagtgtatgaaaaagggtgtcttacgtatc 30887885  T
Q  109 ttttt 113  Q
    |||||    
T  30887886 ttttt 30887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 28307599 - 28307495
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||| ||| | ||| |||||||||||||| |||||||||||||| ||||| |||||||    
T  28307599 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccttaacatatgggggtgtacataagaggtgtatgaaaaaagatgtct-acctatc 28307501  T
Q  109 tttttc 114  Q
    ||||||    
T  28307500 tttttc 28307495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 45782764 - 45782660
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| | |||||||||| |||||||| ||||| ||||||| |||||||    
T  45782764 gagatgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataaaaagtgtataaaaaagggtgtct-acctatc 45782666  T
Q  109 tttttc 114  Q
    ||||||    
T  45782665 tttttc 45782660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 29953669 - 29953572
Alignment:
Q  16 aaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    |||||| ||||||||||||||| ||||||||||||| ||||||||||||   || |||||||||||||||||||||| ||||||| |||||||||||||    
T  29953669 aaaagggtgatgatatgatgtaaaattactcaaatatccctaatacatggaagtctacataagaagtgtatgaaaaagggtgtct-acctatctttttc 29953572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 7699987 - 7699883
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||    
T  7699987 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatc 7699889  T
Q  109 tttttc 114  Q
    ||||||    
T  7699888 tttttc 7699883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 7700185 - 7700081
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||    
T  7700185 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatc 7700087  T
Q  109 tttttc 114  Q
    ||||||    
T  7700086 tttttc 7700081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 7700383 - 7700279
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||    
T  7700383 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatc 7700285  T
Q  109 tttttc 114  Q
    ||||||    
T  7700284 tttttc 7700279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 7700581 - 7700477
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| |||||||||||||||||||| || ||||||| |||||||| ||| |||||| |||||| |||||| |||||||||||| ||||| | |||||||    
T  7700581 gagataaaaaaggatgatgatatgatataaaattactaaaatacccataacacatgaaggtgtatataagaggtgtatgaaaaagggtgt-ttacctatc 7700483  T
Q  109 tttttc 114  Q
    ||||||    
T  7700482 tttttc 7700477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 34828152 - 34828255
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||  ||||||||||||||||| ||||||| |||||||||||| | ||| |||||| ||||||  |||||||||||| | ||||| |||||||    
T  34828152 gagatgaaaagtgatgatgatatgatgtaaaattactaaaatacccctaacatatg-gggtgtgcataagtggtgtatgaaaaaggatgtct-acctatc 34828249  T
Q  109 tttttc 114  Q
    ||||||    
T  34828250 tttttc 34828255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 5811267 - 5811164
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| || ||| ||| ||||||  ||||||| |||||||||||| |||||| |||||||||  || |||||| ||||| ||||||| |||||||    
T  5811267 gagatgaaaaggggtgaggatgtgatgtgaaattactaaaatacccctaacacatga-ggtgtacatgggaggtgtataaaaaagggtgtct-acctatc 5811170  T
Q  109 tttttc 114  Q
    ||||||    
T  5811169 tttttc 5811164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 31148377 - 31148480
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| || ||||||||||||||| ||||||| |||||  ||||| | ||| ||||||  |||||| ||||||||||||  |||||| |||||||    
T  31148377 gagatgaaaatgggtgatgatatgatgtaaaattactaaaataagcctaacatatg-gggtgtgtataagaggtgtatgaaaaagagtgtct-acctatc 31148474  T
Q  109 tttttc 114  Q
    ||||||    
T  31148475 tttttc 31148480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 21807426 - 21807324
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| |||||||||| | ||||  ||||||| |||||||||||| || || ||||||| || |||||||||| ||||| | ||||  |||||||    
T  21807426 gagatgaaaatggatgatgatgttatgtgaaattactaaaatacccctaacacgtg-gggtgtatatgagaagtgtataaaaaaggttgtc-aacctatc 21807329  T
Q  109 ttttt 113  Q
    |||||    
T  21807328 ttttt 21807324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 42221053 - 42220964
Alignment:
Q  23 tgatgatatgatgtataattactcaaa-tacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    ||||||||||||||  ||||||| ||| ||||||||| ||||| | |||||||||||  |||||||| ||||||||||| |||||||||||||    
T  42221053 tgatgatatgatgttaaattactaaaaatacccctaacacatg-gagtgtacataagtggtgtatga-aaaaggtgtct-acctatctttttc 42220964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 13108264 - 13108337
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    ||||||| |||||||||||| |||||| ||||||||| | | |||||| ||||| ||||||| |||||||||||||    
T  13108264 aattactaaaatacccctaacacatga-ggtgtacatgaaaggtgtataaaaaagggtgtct-acctatctttttc 13108337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 6805 - 6909
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6805 gagatgaaaaagggtgatgatatgatgtaaaattacttaaatatccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtatct-acctatc 6903  T
Q  109 tttttc 114  Q
    ||||||    
T  6904 tttttc 6909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 42162685 - 42162789
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||  |||||| |||||||    
T  42162685 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatacccctaatacatgggggtgtacataaaaagtgtatgaaaaagagtgtct-acctatc 42162783  T
Q  109 tttttc 114  Q
    ||||||    
T  42162784 tttttc 42162789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 44081867 - 44081958
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 100  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  44081867 gagatgaaaaagggtgatgatataatgtaaaattactcaaatacccctaatacatgggggtgtacataagaagtgtatgaaaaagggtgtct 44081958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 31318892 - 31318996
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| | ||||| |||||||    
T  31318892 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctaatacatgggggtgtatataagaagtgtatgaaaaatgatgtct-acctatc 31318990  T
Q  109 tttttc 114  Q
    ||||||    
T  31318991 tttttc 31318996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 10203751 - 10203855
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| || ||||||||| || ||||||| ||||| |||||||||||||||||||||||||||  ||||||||||| ||||||| |||||||    
T  10203751 gagatgaaaaagggtggtgatatgatataaaattactaaaatatccctaatacatgagggtgtacataagagatgtatgaaaaagggtgtct-acctatc 10203849  T
Q  109 tttttc 114  Q
    ||||||    
T  10203850 tttttc 10203855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 114
Target Start/End: Original strand, 43186115 - 43186217
Alignment:
Q  10 agatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatct 109  Q
    |||||||||| | |||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  43186115 agatgaaaaaaggtgatgatatgatataaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaatgatgtct-acctatct 43186212  T
Q  110 ttttc 114  Q
    |||||    
T  43186213 ttttc 43186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 12665438 - 12665536
Alignment:
Q  15 aaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| ||||| |||||| | ||||| |||||||||||||    
T  12665438 aaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtacgaaaaaggatgtct-acctatctttttc 12665536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 18184640 - 18184743
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| || |||||||||||| || ||||||| |||||||||||| |||||| ||||||||||| | |||||||||||| | ||||| |||||||    
T  18184640 gagatgaaaaggggtgatgatatgatataaaattactaaaatacccctaacacatga-ggtgtacataaaaggtgtatgaaaaaggatgtct-acctatc 18184737  T
Q  109 tttttc 114  Q
    ||||||    
T  18184738 tttttc 18184743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 30432426 - 30432516
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtct 100  Q
    |||||||||| || ||||||||||||||| ||||||| |||||||| ||||| ||| || ||||||||||| |||||||||||| |||||||    
T  30432426 gagatgaaaaggggtgatgatatgatgtaaaattactaaaatacccataatatatg-ggatgtacataagaggtgtatgaaaaagggtgtct 30432516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 36189303 - 36189415
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| |  |||||||||||| || ||||| | |||||||||||| | |||  ||||||||||||  |||||||||||| ||||||| |||||||    
T  36189303 gagatgaaaaggagtgatgatatgatataaaattattaaaatacccctaacatatg--ggtgtacataagtggtgtatgaaaaagggtgtct-acctatc 36189399  T
Q  109 tttttcgtataaaaat 124  Q
    |||||| || ||||||    
T  36189400 tttttcctaaaaaaat 36189415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 33726110 - 33726202
Alignment:
Q  20 ggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    |||||| ||| ||||||  ||||||| |||||||||||| ||||||  ||||||||  || |||||| ||||| ||||||| |||||||||||||    
T  33726110 ggatgacgatgtgatgtgaaattactaaaatacccctaacacatga-agtgtacatgggaggtgtataaaaaagggtgtct-acctatctttttc 33726202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 113
Target Start/End: Complemental strand, 39249967 - 39249864
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||||||||| |||||| ||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  39249967 gagatgaaaaaggatggtgatataatgtaaaattactaaaatacccctaatacatgggggtgtacataagaggtgtatgaaaaaaggtgtct-acctatc 39249869  T
Q  109 ttttt 113  Q
    |||||    
T  39249868 ttttt 39249864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 2509111 - 2509215
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| || |||||||||||| ||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||    
T  2509111 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatatccctaatacatgagggtgtacataagaggtgtatgaaaaaaagtgtct-acctatc 2509209  T
Q  109 tttttc 114  Q
    ||||||    
T  2509210 tttttc 2509215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 34307239 - 34307138
Alignment:
Q  12 atgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatcttt 111  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||| ||||| | |||||||||||| |||||||||||||||||||| ||||||||||    
T  34307239 atgaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggagtgtacataagaggtgtatgaaaaaaggtgtct-acctatcttt 34307141  T
Q  112 ttc 114  Q
    |||    
T  34307140 ttc 34307138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 46901839 - 46901735
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| ||| |||||||  |||||||||||||| ||||||||||| | ||||| |||||||    
T  46901839 gagatgaaaaagggtgatgatatgatgtaaaattactcaaatactcctgatacatggcggtgtacataagaaatgtatgaaaaaggatgtct-acctatc 46901741  T
Q  109 tttttc 114  Q
    ||||||    
T  46901740 tttttc 46901735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 33732656 - 33732759
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| || |||||||||||| ||||||| |||||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  33732656 gagatgaaaaagggtggtgatatgatgtaaaattactaaaatacccctaatatatg-gggtgtacataagaggtgtatgaaaaagggtgtct-acctatc 33732753  T
Q  109 tttttc 114  Q
    ||||||    
T  33732754 tttttc 33732759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 44958200 - 44958304
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| ||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||| ||||||||| |||||||||||| | ||||| |||||||    
T  44958200 gagataaaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgagggtatacataagaggtgtatgaaaaaggatgtct-acctatc 44958298  T
Q  109 tttttc 114  Q
    ||||||    
T  44958299 tttttc 44958304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 16089909 - 16090011
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||| ||||||| || |||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  16089909 gagataaaaaagg-tggtgatatgatgtaaaattactaaaatacccctaacacatg-gggtgtacataagaggtgtatgaaaaaaggtgtct-acctatc 16090005  T
Q  109 tttttc 114  Q
    ||||||    
T  16090006 tttttc 16090011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 37498969 - 37498863
Alignment:
Q  9 gagatgaaaaag--gatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgaccta 106  Q
    ||||||||||||  | ||||||||||||||| ||||||| |||||||||||| ||||| || ||||||||||| |||||| ||||| ||||||| |||||    
T  37498969 gagatgaaaaagagggtgatgatatgatgtaaaattactaaaatacccctaacacatggggatgtacataagaggtgtataaaaaagggtgtct-accta 37498871  T
Q  107 tctttttc 114  Q
    ||||||||    
T  37498870 tctttttc 37498863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 14573082 - 14573165
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaa 92  Q
    |||||| |||||| ||||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||| ||||||| ||||    
T  14573082 gagatggaaaagggtgatgatatgatgtaaaattactaaaatacccctaacacatgggggtgtacataagaggtgtatgtaaaa 14573165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 3831001 - 3830900
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||  | |||| || ||||||| ||||||| | |||||||||| ||||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  3831001 gagatgaaaagtggtgattatctgatgtaaaattactaatatacccctaacacatg-gggtgtacataagaggtgtatgaaaaagggtgtct-acctatc 3830904  T
Q  109 tttt 112  Q
    ||||    
T  3830903 tttt 3830900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 36315686 - 36315757
Alignment:
Q  47 aaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaagg-tgtctgacctatctttttcgtata 119  Q
    |||||||||| | |||||||| ||||||||||| |||||| |||||||| ||||| ||||||||||||| ||||    
T  36315686 aaatacccctgacacatgagg-tgtacataagaggtgtatcaaaaaaggatgtct-acctatctttttcctata 36315757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 15345762 - 15345655
Alignment:
Q  10 agatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatct 109  Q
    |||||||||| | |||||||||||| |  |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |    
T  15345762 agatgaaaaaaggtgatgatatgatatcaaattactcaaatgcccctaatacat-agggtgtacataagaagtgtatgaaaaaagatgtct-acctattt 15345665  T
Q  110 ttttcgtata 119  Q
    ||||| ||||    
T  15345664 ttttcctata 15345655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 3987009 - 3986906
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||| |||| ||||||| || ||||||||||| | ||||| |||||||    
T  3987009 gagatgaaaagggatgataatatgatgtaaaattactcaaatacccttaatacatg-gggtatacataataaatgtatgaaaaatgatgtct-acctatc 3986912  T
Q  109 tttttc 114  Q
    ||||||    
T  3986911 tttttc 3986906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 114
Target Start/End: Complemental strand, 3118150 - 3118047
Alignment:
Q  10 agatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatct 109  Q
    |||| ||||||| || ||| |||||||| ||||||| |||||||||||||||||| | ||||||||||||  ||||||||||| | ||||| ||||||||    
T  3118150 agataaaaaagggtggtgacatgatgtaaaattactaaaatacccctaatacatgggagtgtacataagagatgtatgaaaaaggatgtct-acctatct 3118052  T
Q  110 ttttc 114  Q
    |||||    
T  3118051 ttttc 3118047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 13697655 - 13697758
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    |||||||||| || |||||||||||| || ||||||| ||||| | |||| ||||| ||||||||||||| | ||||||||||| | | ||| |||||||    
T  13697655 gagatgaaaacgggtgatgatatgatataaaattactaaaatatctctaacacatg-gggtgtacataagtaatgtatgaaaaatgatctct-acctatc 13697752  T
Q  109 tttttc 114  Q
    ||||||    
T  13697753 tttttc 13697758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 24208531 - 24208634
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||||||||| ||| ||| ||||||  ||||||| |||||||||||| |||||| |||||| || ||| |||||| ||||| | ||||| |||||||    
T  24208531 gagatgaaaaagggtgaggatgtgatgtgaaattactaaaatacccctaacacatga-ggtgtaaatgagaggtgtataaaaaaggatgtct-acctatc 24208628  T
Q  109 tttttc 114  Q
    ||||||    
T  24208629 tttttc 24208634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 14023021 - 14023124
Alignment:
Q  9 gagatgaaaaaggatgatgatatgatgtataattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatc 108  Q
    ||||||| || || ||| ||| ||||||  ||||||| |||||||||||| |||||| |||||||||  || |||||| ||||| ||||||| |||||||    
T  14023021 gagatgacaaggggtgacgatgtgatgtgaaattactaaaatacccctaacacatga-ggtgtacatgggaggtgtataaaaaagggtgtct-acctatc 14023118  T
Q  109 tttttc 114  Q
    ||||||    
T  14023119 tttttc 14023124  T

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Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 87236 - 87163
Alignment:
Q  39 aattactcaaatacccctaatacatgagggtgtacataagaagtgtatgaaaaaaggtgtctgacctatctttttc 114  Q
    ||||||| |||||||||||| ||||| |||||||||||| | |||||||||||||||||||| |||||||||||||    
T  87236 aattactaaaatacccctaacacatg-gggtgtacataaaaggtgtatgaaaaaaggtgtct-acctatctttttc 87163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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