View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15134_low_14 (Length: 221)
Name: NF15134_low_14
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_low_14 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 10214963 - 10214751
Alignment:
| Q |
10 |
ccacagacttaattaaaacactttaccaaacccaaaaatttaagaggnnnnnnnn-cactttcaagtaaacatttggttttcccagaaaaacaatggcaa |
108 |
Q |
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| T |
10214963 |
ccacagacttaattaaagcactttaccaaacccaaaaatggaagaggaaaaaaaaacactttcaagtaaacatttggttttcccagtgaaacaacggcaa |
10214864 |
T |
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| Q |
109 |
gtccatgaatctctttgttaagcttctgaagaaggaaacggagccagctagtgttatcattgggaaagggaatggaccatagaacacaaacaacaagaac |
208 |
Q |
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| T |
10214863 |
gtccatgaatctctttgttaagcttctgaagaaggaaacggagccagctagtgttatcattgggaaagggaatggaccatagaacacaaacaacaagaac |
10214764 |
T |
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| Q |
209 |
ctcccatgtccac |
221 |
Q |
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| T |
10214763 |
ctcccatgtccac |
10214751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 10100636 - 10100792
Alignment:
| Q |
68 |
tttcaagtaaacatttggttttcccagaaaaacaatggcaagtccatgaatctctttgttaagcttctgaagaaggaaacggagccagctagtgttatca |
167 |
Q |
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| T |
10100636 |
tttcaagtaaacctttggttttccaagtgaaacaatggcagctgcatgaatctttttgttatgtttatgaagaaggaaaccgagccagttagt--taact |
10100733 |
T |
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| Q |
168 |
ttgggaaag-------ggaatggaccatagaacacaaacaacaagaacctcccatgtcc |
219 |
Q |
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| T |
10100734 |
ttgggaaagggcaaagggaatggaccatagaacacaaacaacaagaaccttccatgtcc |
10100792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 10107328 - 10107397
Alignment:
| Q |
152 |
ccagctagtgttatcattgggaaagggaatggaccatagaacacaaacaacaagaacctcccatgtccac |
221 |
Q |
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| T |
10107328 |
ccagttagtgttatctttgggaaagggaatggaccatagaacacaagcaacacaaacctccaatgtccac |
10107397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 10107263 - 10107326
Alignment:
| Q |
65 |
cactttcaagtaaacatttggttttcccagaaaaacaatggcaagtccatgaatctctttgtta |
128 |
Q |
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| T |
10107263 |
cactttcaagaaaacatatgggtttccctgtgaaacaatggcaggtccatgagtctctttgtta |
10107326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 10100569 - 10100607
Alignment:
| Q |
10 |
ccacagacttaattaaaacactttaccaaacccaaaaat |
48 |
Q |
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| T |
10100569 |
ccacaaacttaattaaagcactttaccaaacccaaaaat |
10100607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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