View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15134_low_3 (Length: 585)
Name: NF15134_low_3
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 571
Target Start/End: Complemental strand, 10029747 - 10029194
Alignment:
| Q |
18 |
aagaagaagaaaaggaaaaccatggaagtcgtgttccttccaattcggcgaatccaggcttaattttaagggaattgaagcaagcgaaattgaatctaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10029747 |
aagaagaagaaaaggaaaaccatgggagtcgtgttccttccaattcggcgagtccaggcttaattttaagggaattgaagcaagcgaaattgaatctaaa |
10029648 |
T |
|
| Q |
118 |
ccgagcaacaaacaatatcgctgatgttcgag-----gtggaatcactcaaaaagaaacttcagaaggaaattaaaggatatcactcgagaaaaccagag |
212 |
Q |
| |
|
|||| |||| || |||| ||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
10029647 |
ccgaacaacgaatgatattgctgatgttcgagtttctgtggaatcactcaacaagaaacttcagaaggaaa-----gaatatcactcgagaaaaccagag |
10029553 |
T |
|
| Q |
213 |
agagttcaactcagaattcttcaaaaataacttcactagagggagagctaaaccaaacaagacttaaactgcaggtggtgaaagatgctgaaattgaatg |
312 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10029552 |
agagtttaactcagaattcttcaaaaataacttcactagaggaagagctaaaccaaacaagacttaaactgcaggtggtgaaagatgctgaaattgaatg |
10029453 |
T |
|
| Q |
313 |
tggttcagatgaaccttccgatattacgaaagagcttcaacgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaatcagaagtt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10029452 |
tggttcagatgaaccttccgatattacgaaagagcttcaacgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaatcagaagtt |
10029353 |
T |
|
| Q |
413 |
acgagagcaatgtctgatattgaacagacaaaagctatgataagaacatccgaaattagattagttgctgctctaaaaatgaaggaagctgctagggctg |
512 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
|
|
| T |
10029352 |
acgagagcaatgtctgagattgaacagacaaaagctatgataagaacatccgaaattagattagttgctgctcgaaaaatgaaggaagctgctcgggccg |
10029253 |
T |
|
| Q |
513 |
ccgaagcaactgcacttgctgagataaaagcgttatcttattatgacggacactgtgtg |
571 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10029252 |
ccgaagcagctgcacttgccgagataaaagcgttatcttattatgacggaaactgtgtg |
10029194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 519
Target Start/End: Original strand, 26987135 - 26987301
Alignment:
| Q |
353 |
cgattgagttccgaggcagaacatttcaagaaaatgggagaagttgcgaaatcagaagttacgagagcaatgtctgatattgaacagacaaaagctatga |
452 |
Q |
| |
|
||||||||||| ||||| || | ||||| |||| | ||||| ||| |||||||||||| | |||| ||||||| ||||| | |||| ||||||||| |
|
|
| T |
26987135 |
cgattgagttcagaggccgagcgtttcagaaaaaagagagaatctgcaaaatcagaagttttaaaagcactgtctgagattgagctgacagaagctatga |
26987234 |
T |
|
| Q |
453 |
taagaacatccgaaattagattagttgctgctctaaaaatgaaggaagctgctagggctgccgaagc |
519 |
Q |
| |
|
||| ||| ||||||| || |||||||| || ||||||||| ||||| |||| ||||| ||||| |
|
|
| T |
26987235 |
taaaaactgccgaaatcaggttagttgcggcaaggaaaatgaagcaagcttctagagctgcagaagc |
26987301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University