View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15134_low_5 (Length: 419)
Name: NF15134_low_5
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 407
Target Start/End: Original strand, 28675169 - 28675558
Alignment:
| Q |
16 |
ccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataaatttgagaattccctgctaaatcactagtgattgtggccatct |
115 |
Q |
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| T |
28675169 |
ccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataaatttgagaattccctgctaaatcactagtgattgtggccatct |
28675268 |
T |
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| Q |
116 |
tgttttgaggttattatctatataaagggaactttgtctcatggattcaaaatgaagggattcaagacgagttgatggaagaaagagagaagtatcattg |
215 |
Q |
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| T |
28675269 |
tgttttgaggttattatgtatataaagggaactttgtctcatggattcaaaatgaagggattcgagacgagttgatggaagaaagagggaggtatcattg |
28675368 |
T |
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| Q |
216 |
tttcctaagatgctctgcataaaaggacaaccaaattattggcataacttgatttaataaagcaactagataagaagcatttccgatttgtccttgttaa |
315 |
Q |
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| T |
28675369 |
tttcctaagatgctctgcataaaaggacaatcaaattattgtcataacttgatttaataaagcaactagagaagaagcatttccgatttgtccttgttag |
28675468 |
T |
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| Q |
316 |
ttacattaacctattaaaaagactatctgnnnnnnnnnnnactcagaaaaacatacatgcttgattccaaacaagtatgccacttattaatc |
407 |
Q |
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| T |
28675469 |
ttacattaacctattaaaaagactatctg--tttttttttactcagaaaaacatacatgcttgattccaaacaagtatgccacttattaatc |
28675558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 28671025 - 28671146
Alignment:
| Q |
16 |
ccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataaatttgagaattccctgctaaatc---actagtgattgtggcca |
112 |
Q |
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| T |
28671025 |
ccttggacaccaacctttgactcatcaaatttctttagttcactttttctgtcataaattggagaatttcctgctacatcattacttgtgattgtggcca |
28671124 |
T |
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| Q |
113 |
tcttgttttgaggttattatct |
134 |
Q |
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|| ||||||| ||| ||||||| |
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| T |
28671125 |
tcatgttttgtggtaattatct |
28671146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 28651478 - 28651570
Alignment:
| Q |
207 |
gtatcattgtttcctaagatgctctgcataaaaggacaaccaaattattggcataacttga-tttaataaagcaactagataagaagcatttc |
298 |
Q |
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| T |
28651478 |
gtatcattgtttcctagaatactccgcataaaaggacaactatatttttgacctaatttgaatttaataaagcaactagataagaagcatttc |
28651570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 28651303 - 28651362
Alignment:
| Q |
16 |
ccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataaatt |
75 |
Q |
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| T |
28651303 |
ccttggacaccaacctttgactcatcaaactcctttagttcactttttttgtcataaatt |
28651362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 28642442 - 28642501
Alignment:
| Q |
16 |
ccttggacaccaacctttgactcatcaaagttttttagttcactttttctgtcataaatt |
75 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||| |
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| T |
28642442 |
ccttggacaccaacctttgactcatcaaactcctttagttcactctttttgtcataaatt |
28642501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 296
Target Start/End: Original strand, 28642850 - 28642879
Alignment:
| Q |
267 |
atttaataaagcaactagataagaagcatt |
296 |
Q |
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| T |
28642850 |
atttaataaagcaactagataagaagcatt |
28642879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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