View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15134_low_6 (Length: 389)
Name: NF15134_low_6
Description: NF15134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15134_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 3 - 375
Target Start/End: Complemental strand, 52142564 - 52142192
Alignment:
| Q |
3 |
ctctttgaagagatccctctggatgcatagcttcaaaagtagcaggattccaccatctaatggtaaagataacaattcctggaaagaacaatagcattaa |
102 |
Q |
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| T |
52142564 |
ctctttgaagagatccctctggatgcatagcttcaaaagtagcaggattccaccatctaatggtaaagataacaattcctggaaagaacaatagcattaa |
52142465 |
T |
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| Q |
103 |
agccataattaaaaccaaaacggaatcaataatgaacagaaagttggcatagctataacaagtccattcaaattcttgcataatctttgacaatgtgata |
202 |
Q |
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| T |
52142464 |
agccataataaaaaccaaaacggaaccaataatgaacagaaggttggcatatctataacaagtccattcaaattgttgcataatctttgacaatgtgata |
52142365 |
T |
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| Q |
203 |
tttatgtagaatttcaaaagaactattcggttttaaggtataaaaaagcagaaattggaaaaatcatcgacataataaagtttgcacacaaaactagaat |
302 |
Q |
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| T |
52142364 |
tttatgtagaatttcaaaagaactattcggttttaaggtataaaaaagcagaaattggaaaaatcatctacataataaagtttgtacacaaaactagaat |
52142265 |
T |
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| Q |
303 |
aatannnnnnnaccaagattttgtacattacaacgtaccatttcatggaaaccaacacatcatatgcacatta |
375 |
Q |
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| T |
52142264 |
aatatttttttaccaggattttgtacattacaacgtaccatttcatggaaaccaacacatcatatgcacatta |
52142192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17805434 - 17805503
Alignment:
| Q |
16 |
tccctctggatgcatagcttcaaaagtagcaggattccaccatctaatggtaaagataacaattcctgga |
85 |
Q |
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| T |
17805434 |
tccctctggtcgcatagcttctaaggtctcaggattccaccatcgaatggtaaagaaaaccaatcctgga |
17805503 |
T |
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