View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_high_12 (Length: 439)
Name: NF15135_high_12
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_high_12 |
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| [»] scaffold0649 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 20967007 - 20967420
Alignment:
| Q |
8 |
gcaaatcatggaattcactcatctcctctgatcccaccttcgccaaaatgcacctcattaaatcatctccacgaaaccctaaacacctcacaatgttttc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
20967007 |
gcaaatcatggaattcactcatctcctctgatcccaccttcgccaaaatgcacctcattaaatcatctccacaaaaccctaaacacctcacaatgttttc |
20967106 |
T |
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| Q |
108 |
gtgcaagtacaaagactattccttgcctaatcagtttataaccatttccgaagatttcgtactcagtcactatcaagtgaagaacgaagactgtaaccta |
207 |
Q |
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||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20967107 |
gtgcaagaacaaagactattcctttcctagtcagtttataaccatttccaaagattttgtactcaatcactatcaagtgaagaacgaagactgtaaccta |
20967206 |
T |
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| Q |
208 |
gttcttggttcctccaatggattgatatgcatgctcagtcaacatatataccataatgttcaaaacttccatctccgtttctggaacccagccacgaggt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967207 |
gttcttggttcctccaatggattgatatgcatgctcagtcaacatatataccataatgttcaaaacttccatctccgtttctggaacccagccacgaggt |
20967306 |
T |
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| Q |
308 |
cagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaaccggaaaatataa |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20967307 |
cagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaaccggaaaatataa |
20967406 |
T |
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| Q |
408 |
ggtggtggcattca |
421 |
Q |
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| T |
20967407 |
ggtggtggcattca |
20967420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 421
Target Start/End: Original strand, 20979819 - 20980243
Alignment:
| Q |
8 |
gcaaatcatggaattcactcatctcctctgatcccaccttcgccaaaatgcacctcattaaatcatctccacgaaaccctaaacacc-----tcacaatg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
20979819 |
gcaaatcatggaattcactcatctcctctgatcccaccttcgccaaaatgcacctcattaaatcatctccacgaaaccctaaacacctcacctcacaatg |
20979918 |
T |
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| Q |
103 |
ttttcgtgcaagtacaaagactattccttgcctaatcagtttataaccatttccgaagatttcgtactcagtcactatcaagtgaagaacgaagactgta |
202 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
20979919 |
ttttcgtgcaagaacaaagactattccttgcctaatcagtttataaccatttccgaagatttcgtactcagtcactatcaatttaataacgaagactgta |
20980018 |
T |
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| Q |
203 |
acctagttcttggttcctccaatggattgatatgcatgctcagtcaacatatatacca------taatgttcaaaacttccatctccgtttctggaaccc |
296 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||| ||||||||||| |||||||| |
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| T |
20980019 |
accgggttcttggttcctccaatggattgatatgcatgctcagtgaatatatataccaatacggtaatgttcaaaactttcatctccgtttttggaaccc |
20980118 |
T |
|
| Q |
297 |
agccacgaggtcagtgtcaaaaatagtcggctgttttaccaatacttttatggaccggtatgactatttcagattttcatttggttgcgataatacaacc |
396 |
Q |
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||| |||||||||||||| ||||||||||||||| ||| |||| | |||||||||| | ||||||||||||||||||||||||| | ||||||||||||| |
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| T |
20980119 |
agcaacgaggtcagtgtcgaaaatagtcggctgtgttagcaatgcgtttatggaccagcatgactatttcagattttcatttggctacgataatacaacc |
20980218 |
T |
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| Q |
397 |
ggaaaatataaggtggtggcattca |
421 |
Q |
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||||||||||||||||||||||||| |
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| T |
20980219 |
ggaaaatataaggtggtggcattca |
20980243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 4656 - 4721
Alignment:
| Q |
6 |
gagcaaatcatggaattcactcatctcctctgatcccaccttcgccaaaatgcacctcattaaatcatc |
74 |
Q |
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| T |
4656 |
gagcaaatcatggaactcactcatctcc---gatcccatcttcgtccaaatgcacctcaagaaatcatc |
4721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 4933 - 4981
Alignment:
| Q |
280 |
ctccgtttctggaacccagccacgaggtcagtgtcaaaaatagtcggct |
328 |
Q |
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| T |
4933 |
ctccgtttctggaacccggccacgaggtcagtatcgaaaagactcggct |
4981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 416
Target Start/End: Original strand, 5013 - 5069
Alignment:
| Q |
360 |
ctatttcagattttcatttggttgcgataatacaaccggaaaatataaggtggtggc |
416 |
Q |
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|||||| | |||||| ||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
5013 |
ctatttaaaattttcgtttggttatgataacacaaccggaaaatataaggttgtggc |
5069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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