View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15135_high_18 (Length: 245)

Name: NF15135_high_18
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15135_high_18
NF15135_high_18
[»] chr3 (24 HSPs)
chr3 (85-245)||(6733227-6733387)
chr3 (107-245)||(6944627-6944765)
chr3 (85-245)||(7585018-7585182)
chr3 (47-179)||(6410321-6410453)
chr3 (44-245)||(6557031-6557226)
chr3 (108-245)||(6782645-6782782)
chr3 (107-245)||(6941514-6941652)
chr3 (167-245)||(6944906-6944984)
chr3 (189-245)||(6523921-6523977)
chr3 (186-245)||(7585293-7585352)
chr3 (201-245)||(7585543-7585587)
chr3 (201-245)||(6523802-6523846)
chr3 (201-245)||(6530843-6530887)
chr3 (201-245)||(6841891-6841935)
chr3 (201-243)||(5247849-5247891)
chr3 (201-243)||(6242989-6243031)
chr3 (91-159)||(6785020-6785086)
chr3 (47-86)||(6782809-6782848)
chr3 (204-243)||(6880191-6880230)
chr3 (201-243)||(4391228-4391270)
chr3 (201-243)||(5265754-5265796)
chr3 (201-243)||(5278337-5278379)
chr3 (201-233)||(6914773-6914805)
chr3 (47-86)||(6944561-6944601)
[»] scaffold0425 (1 HSPs)
scaffold0425 (167-245)||(10079-10157)
[»] scaffold2053 (1 HSPs)
scaffold2053 (166-245)||(569-648)
[»] chr7 (1 HSPs)
chr7 (201-242)||(6575639-6575680)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 6733227 - 6733387
Alignment:
Q  85 ttgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 184  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6733227 ttgattcaatagtttggttaagaatatatgttcgtaccttccaaaccaaaaagatttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 6733326  T
Q  185 atcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6733327 atcaatccacacattcgggatgtgactaattgtatgccaacgctctcctccctccttttca 6733387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 6944627 - 6944765
Alignment:
Q  107 aatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatg 206  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  6944627 aatatatgttcgtaccttccaaaccaaaaaggtttgaccaaaagtgggacccataacatctcattcctgtttaatgcgatcaatccacacactcgggatg 6944726  T
Q  207 tgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6944727 tgacaaattgtatgccaacgctctcctccctccttttca 6944765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 85 - 245
Target Start/End: Original strand, 7585018 - 7585182
Alignment:
Q  85 ttgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 184  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |    
T  7585018 ttgattcaatagtttggttaagaatatatgttcgtaccttccaaaccaaaaagatttgaccaaatgtgggacccataacatctcattcctgcttaatttc 7585117  T
Q  185 atc----aatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  7585118 atcaattaatccacacattcgggatgtgagtaattgtatgccaacgctctcctccctccttttca 7585182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 179
Target Start/End: Complemental strand, 6410453 - 6410321
Alignment:
Q  47 gaagccagaaaataagaatataaaattaagaaaataaattgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgacca 146  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| || ||  ||||| ||||||||| |||||||||||||||||||| ||||||||    
T  6410453 gaagtcagaaaataagaatataaaattcagaaaataaattgatgcaagtgctttattaagtatatatgttcgtaccttccgaaccaaaaagatttgacca 6410354  T
Q  147 aacgtgggacccataacatctcattcctgctta 179  Q
    || ||||||||||||||||||||||||||||||    
T  6410353 aaagtgggacccataacatctcattcctgctta 6410321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 44 - 245
Target Start/End: Complemental strand, 6557226 - 6557031
Alignment:
Q  44 agggaagccagaaaataagaatataaaattaagaaaataaattgatgcaattgtttggttaag-----aatatatgtttgtaccttccgaaccaaaaagg 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||| |||||||| |||||           
T  6557226 agggaagccagaaaaaaagaatataaaattaagaaaataaattgatgcaattgtttggttaagaatagaatatatgttcgtaccttcagaacc------- 6557134  T
Q  139 tttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctc 238  Q
        |||||| |||||||||||||||||||||| ||| | |||    |||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  6557133 ----accaaaagtgggacccataacatctcatttctgttgaatatagtcaatccacacataagggatgtgactaattgtatgccaacgctctcctccctc 6557038  T

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Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 6782782 - 6782645
Alignment:
Q  108 atatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatgt 207  Q
    ||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| || |||| || |||||| |||||   |||||||    
T  6782782 atatatgttcgtacattcagaaccaaaaaggtttgaccaaaagtgggacccataacttctcattccggcctaattccgtcaatcaacacacgagggatgt 6782683  T
Q  208 gacaaattgtatgccaacgctctcctccctccttttca 245  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6782682 gacaaattgtatgccaacgctctcctccctccttttca 6782645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 6941514 - 6941652
Alignment:
Q  107 aatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatg 206  Q
    ||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | ||||   |||||   |||  | ||||||    
T  6941514 aatatttgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcattcctgttcaatgaggtcaattgtcaccatagggatg 6941613  T
Q  207 tgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6941614 tgacaaattgtatgccaacgctctcctccctccttttca 6941652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 6944906 - 6944984
Alignment:
Q  167 tcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||| || |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6944906 tcattccttctaaatgtcgtcaatccacacattcgggatgtgactaattgtatgccaacgctctcctccctccttttca 6944984  T

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Target: chr3; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 6523977 - 6523921
Alignment:
Q  189 atccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  6523977 atccacacattcgggatgtgagtaattgtatgccaacgctctcctccctccttttca 6523921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 7585293 - 7585352
Alignment:
Q  186 tcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  7585293 tcaatcctcacattcgggatgtgactaattgtatgccaacactctcctccctccttttca 7585352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 7585543 - 7585587
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  7585543 gggatgtgactaattgtatgccaacgctctcctccctccttttca 7585587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 6523846 - 6523802
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  6523846 gggatgtgactaattgtatgccaaagctctcctccctccttttca 6523802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 6530887 - 6530843
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||| |||||||||||||||||||| |||||||||||||    
T  6530887 gggatgtgaccaattgtatgccaacgctctcgtccctccttttca 6530843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 6841935 - 6841891
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  6841935 gggatgtgactaattgtgtgccaacgctctcctccctccttttca 6841891  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 5247849 - 5247891
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    |||||||||| |||||||||||||| |||||||||||||||||    
T  5247849 gggatgtgacgaattgtatgccaacactctcctccctcctttt 5247891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 6242989 - 6243031
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  6242989 gggatgtgacaaattgtatgccaacgctctccttgctcctttt 6243031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 6785086 - 6785020
Alignment:
Q  91 caattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggaccca 159  Q
    |||| ||||||||||||||||  |||  |||||||| |||||||||| ||||||||||| |||||||||    
T  6785086 caatggtttggttaagaatat--gttcataccttccaaaccaaaaagatttgaccaaacatgggaccca 6785020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 6782848 - 6782809
Alignment:
Q  47 gaagccagaaaataagaatataaaattaagaaaataaatt 86  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  6782848 gaagccaataaataagaatataaaattaagaaaataaatt 6782809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 6880191 - 6880230
Alignment:
Q  204 atgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  6880191 atgtgactaattgtatgccaacgctctccttcctcctttt 6880230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 4391270 - 4391228
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  4391270 gggatgtgacaaattgtatgccagcactctccttcctcctttt 4391228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 5265754 - 5265796
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    ||||| |||||||| |||||||||||||||||| |||||||||    
T  5265754 gggatatgacaaatcgtatgccaacgctctccttcctcctttt 5265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Original strand, 5278337 - 5278379
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 243  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  5278337 gggatgtgacaaattgtattccaactctctccttcctcctttt 5278379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 6914773 - 6914805
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcct 233  Q
    ||||||||||||||| |||||||||||||||||    
T  6914773 gggatgtgacaaattctatgccaacgctctcct 6914805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 6944561 - 6944601
Alignment:
Q  47 gaagccagaaaataagaatataaaa-ttaagaaaataaatt 86  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  6944561 gaagtcagaaaataagaatataaaatttaagaaaataaatt 6944601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 10157 - 10079
Alignment:
Q  167 tcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    ||||||||||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  10157 tcattcctgcttaatgttgtcaatgcacacattcgggatgtgactaattgtatgccaaagctctcctccctccttttca 10079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 245
Target Start/End: Complemental strand, 648 - 569
Alignment:
Q  166 ctcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttca 245  Q
    |||||| ||||| ||| || ||||||  |||||  |||||||||| |||||||||||||  |||||||||||||||||||    
T  648 ctcatttctgctcaattccgtcaatcgtcacatgagggatgtgactaattgtatgccaattctctcctccctccttttca 569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 6575680 - 6575639
Alignment:
Q  201 gggatgtgacaaattgtatgccaacgctctcctccctccttt 242  Q
    ||||| |||| ||||||||||||||| |||||||||||||||    
T  6575680 gggatttgacgaattgtatgccaacgatctcctccctccttt 6575639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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