View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_high_20 (Length: 226)
Name: NF15135_high_20
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41901914 - 41902055
Alignment:
| Q |
1 |
tctcaagagaaagacccaattctggttcttctgaacttttgtgatcatcatggtcatcatgatcagcttca-gagtctttgattttgatatttccaccac |
99 |
Q |
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| T |
41901914 |
tctcaagagaaagaccaaattctggttcttctgaacttttgtgatcatcatg---------atcagcttcaagagtctttgattttgatatttccatcac |
41902004 |
T |
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| Q |
100 |
tggaactcttcttctttacgtccattattgatacactttgctcaattatga |
150 |
Q |
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| T |
41902005 |
tggaactcttcttctttacgtccattattgatacactttgctgaattatga |
41902055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 41893697 - 41893846
Alignment:
| Q |
1 |
tctcaagagaaagacccaattctggttcttctgaacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccaccact |
100 |
Q |
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| T |
41893697 |
tctcaagagaaagacccaactctagttcttctgaacatttgtgatcatcaaggtcaacatgattagcttcagagtctttgattttgatatttccgtcact |
41893796 |
T |
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| Q |
101 |
ggaactcttcttctttacgtccattattgatacactttgctcaattatga |
150 |
Q |
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| T |
41893797 |
gcaactctttttctttgcgtccattcttgatacacttcactgaattatga |
41893846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 41896908 - 41897003
Alignment:
| Q |
54 |
tcatcatgatcagcttcagagtctttgattttgatatttccaccactggaactcttcttctttacgtccattattgatacactttgctcaattatg |
149 |
Q |
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| T |
41896908 |
tcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctctttctttgcttccattcttgatacactttgctaaattatg |
41897003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 41828788 - 41828689
Alignment:
| Q |
38 |
tttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccaccactggaactcttcttctttacgtccattattgatacactt |
137 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||| | ||||||| | |||||| ||||||||||| |
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| T |
41828788 |
tttgtgatcatcatggtcaacatgatcagcttcaaagtctttgattctgatatttccatcactgcaactttccttctttgcttccattcttgatacactt |
41828689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 137
Target Start/End: Original strand, 41885936 - 41886034
Alignment:
| Q |
38 |
tttgtgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccaccactggaactcttcttctttacgtccattattgatacactt |
137 |
Q |
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| T |
41885936 |
tttgtgatcatcatggtcaata-gatcagcttcagagtctttgattctgatatttccatcactgcaactttccttctttgcttccattcttgatacactt |
41886034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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