View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15135_high_6 (Length: 585)

Name: NF15135_high_6
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15135_high_6
NF15135_high_6
[»] chr5 (19 HSPs)
chr5 (161-422)||(23767368-23767630)
chr5 (161-422)||(23817216-23817478)
chr5 (4-152)||(23766810-23766958)
chr5 (4-152)||(23816658-23816806)
chr5 (435-572)||(23767620-23767757)
chr5 (435-572)||(23817468-23817605)
chr5 (49-152)||(23769639-23769742)
chr5 (49-152)||(23819487-23819590)
chr5 (48-152)||(23732122-23732226)
chr5 (48-152)||(23861018-23861122)
chr5 (48-109)||(11081811-11081872)
chr5 (48-152)||(23814085-23814189)
chr5 (58-107)||(20292995-20293044)
chr5 (47-114)||(1427684-1427751)
chr5 (58-107)||(20301443-20301492)
chr5 (58-107)||(20305856-20305905)
chr5 (58-107)||(20310260-20310309)
chr5 (57-109)||(3181715-3181767)
chr5 (48-112)||(23764252-23764316)
[»] chr3 (51 HSPs)
chr3 (49-117)||(4157937-4158005)
chr3 (51-118)||(803213-803280)
chr3 (56-133)||(1891064-1891141)
chr3 (48-109)||(4142126-4142187)
chr3 (47-118)||(989385-989456)
chr3 (51-109)||(2696727-2696785)
chr3 (48-117)||(3754590-3754659)
chr3 (55-118)||(2459264-2459327)
chr3 (48-114)||(2678391-2678457)
chr3 (47-133)||(7432045-7432131)
chr3 (58-107)||(13498224-13498273)
chr3 (51-107)||(2442039-2442095)
chr3 (51-107)||(2476634-2476690)
chr3 (47-114)||(1007454-1007521)
chr3 (47-114)||(1022482-1022549)
chr3 (48-107)||(2644354-2644413)
chr3 (48-107)||(2659144-2659203)
chr3 (47-109)||(968669-968731)
chr3 (47-133)||(1936971-1937057)
chr3 (56-106)||(2631358-2631408)
chr3 (48-117)||(3745998-3746067)
chr3 (47-107)||(956381-956441)
chr3 (56-107)||(783799-783850)
chr3 (47-114)||(1940570-1940637)
chr3 (56-107)||(2456249-2456300)
chr3 (48-114)||(2686304-2686373)
chr3 (56-107)||(7324431-7324482)
chr3 (48-107)||(7334231-7334290)
chr3 (56-107)||(7430536-7430587)
chr3 (56-107)||(37753345-37753396)
chr3 (56-107)||(43991960-43992011)
chr3 (60-118)||(997565-997623)
chr3 (60-118)||(1013955-1014013)
chr3 (47-109)||(1931145-1931207)
chr3 (58-107)||(9561987-9562036)
chr3 (54-106)||(768327-768379)
chr3 (56-104)||(9587185-9587233)
chr3 (47-95)||(13479590-13479638)
chr3 (56-107)||(754609-754660)
chr3 (56-107)||(771499-771550)
chr3 (48-107)||(2502148-2502207)
chr3 (56-107)||(7942485-7942536)
chr3 (56-106)||(2492083-2492133)
chr3 (58-108)||(9608346-9608396)
chr3 (55-105)||(23230981-23231031)
chr3 (76-133)||(1897697-1897754)
chr3 (76-133)||(1907143-1907200)
chr3 (48-97)||(44001605-44001654)
chr3 (340-388)||(1019515-1019563)
chr3 (54-106)||(9594622-9594674)
chr3 (56-104)||(14888612-14888660)
[»] chr8 (1 HSPs)
chr8 (47-134)||(19727854-19727941)
[»] chr1 (10 HSPs)
chr1 (48-108)||(51381447-51381507)
chr1 (57-110)||(24513053-24513106)
chr1 (55-108)||(51854946-51854999)
chr1 (55-103)||(51832377-51832425)
chr1 (65-108)||(24246506-24246549)
chr1 (58-109)||(51782797-51782848)
chr1 (66-108)||(23896147-23896189)
chr1 (55-101)||(51407558-51407604)
chr1 (55-108)||(51756749-51756802)
chr1 (55-108)||(51858605-51858658)
[»] chr4 (3 HSPs)
chr4 (51-118)||(20019767-20019834)
chr4 (51-118)||(20016180-20016248)
chr4 (47-118)||(22672118-22672189)
[»] chr6 (11 HSPs)
chr6 (56-106)||(24417486-24417536)
chr6 (55-105)||(19119065-19119115)
chr6 (55-105)||(19126359-19126409)
chr6 (51-96)||(176345-176390)
chr6 (47-104)||(370776-370833)
chr6 (55-108)||(4183000-4183053)
chr6 (55-108)||(4743844-4743897)
chr6 (58-103)||(9825517-9825562)
chr6 (55-108)||(17368365-17368418)
chr6 (55-103)||(1459540-1459588)
chr6 (55-103)||(1470922-1470970)
[»] chr2 (8 HSPs)
chr2 (56-108)||(33038159-33038211)
chr2 (55-107)||(36577366-36577418)
chr2 (56-107)||(34560917-34560968)
chr2 (56-106)||(33020314-33020364)
chr2 (56-107)||(33026657-33026708)
chr2 (54-104)||(7168688-7168738)
chr2 (54-107)||(7160752-7160805)
chr2 (53-97)||(6538844-6538888)
[»] scaffold0044 (1 HSPs)
scaffold0044 (56-108)||(89142-89194)
[»] chr7 (2 HSPs)
chr7 (54-103)||(3927063-3927112)
chr7 (53-107)||(1078157-1078211)
[»] scaffold0015 (1 HSPs)
scaffold0015 (57-108)||(32330-32381)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 161 - 422
Target Start/End: Original strand, 23767368 - 23767630
Alignment:
Q  161 cggatatttttacaacagagatggccaatatatgaaggatgatggtaccatggcggatttttggatttcctacgaggtcctacatcggtaacactgactg 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767368 cggatatttttacaacaaagatggccaatatatgaaggatgatggtaccatggcggatttttggatttcctacgaggtcctacatcggtaacactgactg 23767467  T
Q  261 agaaacaaatagatgaaatataactgccctgaacaaattatcaactcctatgttgat-aaaaatggggagccaacaaacattcaattcaatatcatcttg 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23767468 agaaacaaatagatgaaatataactgccctgaacaaattatcaactcccatgttgatgaaaaatggggagccaacaaacattcaattcaatatcatcttg 23767567  T
Q  360 atcaatttagtaatctcaaaataactattggttcctaaaatgagtgcgatacaagtgtttatt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23767568 atcaatttagtaatctcaaaataactattggttcctaaaatgagtgcgatacaagtgtttatt 23767630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 161 - 422
Target Start/End: Original strand, 23817216 - 23817478
Alignment:
Q  161 cggatatttttacaacagagatggccaatatatgaaggatgatggtaccatggcggatttttggatttcctacgaggtcctacatcggtaacactgactg 260  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23817216 cggatatttttacaacaaagatggccaatatatgaaggatgatggtaccatggcggatttttggatttcctacgaggtcctacatcggtaacactgactg 23817315  T
Q  261 agaaacaaatagatgaaatataactgccctgaacaaattatcaactcctatgttgat-aaaaatggggagccaacaaacattcaattcaatatcatcttg 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23817316 agaaacaaatagatgaaatataactgccctgaacaaattatcaactcccatgttgatgaaaaatggggagccaacaaacattcaattcaatatcatcttg 23817415  T
Q  360 atcaatttagtaatctcaaaataactattggttcctaaaatgagtgcgatacaagtgtttatt 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23817416 atcaatttagtaatctcaaaataactattggttcctaaaatgagtgcgatacaagtgtttatt 23817478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 23766810 - 23766958
Alignment:
Q  4 tcaaaaatatgtattaccatgataaatgaatacgatagcatataaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23766810 tcaaaaatatgtattaccatgataaatgaatacgatatcatataaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23766909  T
Q  104 catcattaccagaaacgaggcacaaacaattcctgcaaaaactcaagtg 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23766910 catcattaccagaaacgaggcacaaacaattcctgcaaaaactcaagtg 23766958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 23816658 - 23816806
Alignment:
Q  4 tcaaaaatatgtattaccatgataaatgaatacgatagcatataaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23816658 tcaaaaatatgtattaccatgataaatgaatacgatatcatataaatagtgaacaatttagtccaagactctttatttccatattctttcataatccaaa 23816757  T
Q  104 catcattaccagaaacgaggcacaaacaattcctgcaaaaactcaagtg 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23816758 catcattaccagaaacgaggcacaaacaattcctgcaaaaactcaagtg 23816806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 435 - 572
Target Start/End: Original strand, 23767620 - 23767757
Alignment:
Q  435 aagtgtttattcatttgatgtttttcaattttttaaaacacgagcatttgcacccttacttggtgggtgttagttaatgcactataagtccttattttgt 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23767620 aagtgtttattcatttgatgtttttcaattttttaaaacacgagcatttgcacccttacttggtgggtgttagtcaatgcactataagtccttattttgt 23767719  T
Q  535 agcacagcattagctagtaactactacggttgatattg 572  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23767720 agcacagcattagctagtaactactacggttgatattg 23767757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 435 - 572
Target Start/End: Original strand, 23817468 - 23817605
Alignment:
Q  435 aagtgtttattcatttgatgtttttcaattttttaaaacacgagcatttgcacccttacttggtgggtgttagttaatgcactataagtccttattttgt 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23817468 aagtgtttattcatttgatgtttttcaattttttaaaacacgagcatttgcacccttacttggtgggtgttagtcaatgcactataagtccttattttgt 23817567  T
Q  535 agcacagcattagctagtaactactacggttgatattg 572  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23817568 agcacagcattagctagtaactactacggttgatattg 23817605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 23769639 - 23769742
Alignment:
Q  49 atagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactca 148  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||| | |||    |||||||||||||| | ||| |||||    
T  23769639 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaatccagcacaaacaattcccgaaaacactca 23769738  T
Q  149 agtg 152  Q
    ||||    
T  23769739 agtg 23769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 23819487 - 23819590
Alignment:
Q  49 atagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactca 148  Q
    ||||||||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||| | |||    |||||||||||||| | ||| |||||    
T  23819487 atagtgaacaatttagtccaagacgctttattcccatattccttcataatccaaacatcattactacaaatccagcacaaacaattcccgaaaacactca 23819586  T
Q  149 agtg 152  Q
    ||||    
T  23819587 agtg 23819590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 23732226 - 23732122
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 147  Q
    ||||||||||| |||| ||||||||  |||||| |||||||| |||||||||||||||||||||| |||||     ||||||||||||||| ||| ||||    
T  23732226 aatagtgaacagtttattccaagacgctttattcccatattccttcataatccaaacatcattactagaaatccaccacaaacaattcctgaaaacactc 23732127  T
Q  148 aagtg 152  Q
    |||||    
T  23732126 aagtg 23732122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 23861018 - 23861122
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 147  Q
    |||||||||||||||||||||||||  |||  | |||||||| ||||| |||||||||||||||| |||||    |||||||||||||||| ||| ||||    
T  23861018 aatagtgaacaatttagtccaagacgctttcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcctgaaaacactc 23861117  T
Q  148 aagtg 152  Q
    |||||    
T  23861118 aagtg 23861122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 11081872 - 11081811
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    |||||| ||||||||||||||||||| |||||||||||| || ||||||| |||||||||||    
T  11081872 aatagtaaacaatttagtccaagactctttatttccatactccttcataacccaaacatcat 11081811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 23814085 - 23814189
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaattcctgcaaaaactc 147  Q
    |||||||||||||||||||||||||  | |  | |||||||| ||||| |||||||||||||||| |||||    |||||||||||||| | ||| ||||    
T  23814085 aatagtgaacaatttagtccaagacgctgtcatcccatattccttcattatccaaacatcattactagaaatccagcacaaacaattcccgaaaacactc 23814184  T
Q  148 aagtg 152  Q
    |||||    
T  23814185 aagtg 23814189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20293044 - 20292995
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatc 20292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 1427684 - 1427751
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattacca 114  Q
    |||| ||||||| |||| ||||||||| | |||||||||| |||||||||| ||||||||||| ||||    
T  1427684 aaattgtgaacagtttaatccaagactctgtatttccatactctttcataacccaaacatcatcacca 1427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20301492 - 20301443
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| |||| || ||||||| |||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatc 20301443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20305905 - 20305856
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| |||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatc 20305856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 20310309 - 20310260
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| |||| |||||||||| ||||||||||| |||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatc 20310260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 3181767 - 3181715
Alignment:
Q  57 caatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    ||||||| ||||||||| || |||||||||||| ||||||| |||||||||||    
T  3181767 caatttaatccaagactcttcatttccatattccttcataagccaaacatcat 3181715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 23764252 - 23764316
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattac 112  Q
    ||||||||||||| |||||||||||  |||  | |||||||| ||||| ||||||||||||||||    
T  23764252 aatagtgaacaatgtagtccaagacgctttcatcccatattccttcattatccaaacatcattac 23764316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 4157937 - 4158005
Alignment:
Q  49 atagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaa 117  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |||||||    
T  4157937 atagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcataaccagaa 4158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 803213 - 803280
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||    
T  803213 agtgaacaacttagtccaagactctttatttccatattctttcataacccaaacatcatcaccagaaa 803280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 133
Target Start/End: Original strand, 1891064 - 1891141
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaat 133  Q
    |||||||||||||||| | ||||||||||| ||| ||||||||||||||||||| |||| |||| |||||||||||||    
T  1891064 acaatttagtccaagagtctttatttccatgttccttcataatccaaacatcatgaccaaaaaccaggcacaaacaat 1891141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 4142126 - 4142187
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||    
T  4142126 aatagtgaacaatttagtccaagactctttatttccatattccttcataagccaaacatcat 4142187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 989456 - 989385
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    ||||||||||||||||||||||||||| ||||||||| || |||||||| | ||||||||||| ||||||||    
T  989456 aaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacatcatcaccagaaa 989385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 2696727 - 2696785
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||    
T  2696727 agtgaacaatttaatccaagactctttatttccatattccttcataatccaaacatcat 2696785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 3754659 - 3754590
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaa 117  Q
    |||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||  |||||||    
T  3754659 aatagtaaacaatttagtccaagactctttatttccatattccttcataacccaaacatcaacaccagaa 3754590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 2459327 - 2459264
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||||||| ||| ||||||||    
T  2459327 aacaattttgtccaagactctttatttccatattccttcataatccaaacaacatgaccagaaa 2459264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 2678391 - 2678457
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattacca 114  Q
    ||||||||||||||||||||| |||| ||| |||||||||| |||||||| ||||||||||| ||||    
T  2678391 aatagtgaacaatttagtccatgactctttttttccatattgtttcataacccaaacatcatcacca 2678457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 7432045 - 7432131
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaat 133  Q
    |||| ||||||||||||||||| || | ||||||||||||||| |||||| |||||||||||| ||||| || || |||||| ||||    
T  7432045 aaatggtgaacaatttagtccacgattctttatttccatattccttcatactccaaacatcatgaccagcaaggatgcacaagcaat 7432131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 13498273 - 13498224
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatc 13498224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 2442095 - 2442039
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||||||||||||||||| | |||||||||||| || |||||||||||||||||    
T  2442095 agtgaacaatttagtccaagaatctttatttccatactccttcataatccaaacatc 2442039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 2476690 - 2476634
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||    
T  2476690 agtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatc 2476634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 1007521 - 1007454
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattacca 114  Q
    |||||||||||||||||||||| ||||  |||||||||||||| ||||| | ||||||||||| ||||    
T  1007521 aaatagtgaacaatttagtccaggactcgttatttccatattccttcattacccaaacatcatcacca 1007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 1022549 - 1022482
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattacca 114  Q
    |||||||||||||||||||||| ||||  |||||||||||||| ||||| | ||||||||||| ||||    
T  1022549 aaatagtgaacaatttagtccatgactcgttatttccatattccttcattacccaaacatcatcacca 1022482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 2644354 - 2644413
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||| |||||||||||||||||| || ||||||||| || |||||||||||||||||    
T  2644354 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2644413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 2659144 - 2659203
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||| |||||||||||||||||| || ||||||||| || |||||||||||||||||    
T  2659144 aatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatc 2659203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 968731 - 968669
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    |||||||||| ||||||||||| |||| ||||||||||| ||| ||||||| |||||||||||    
T  968731 aaatagtgaataatttagtccatgactctttatttccatgttccttcataacccaaacatcat 968669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 1936971 - 1937057
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaat 133  Q
    |||||||||||||||||| ||| || | |||||||  |||||| ||||||| ||||||||||| |||| |||| | |||||||||||    
T  1936971 aaatagtgaacaatttagaccaggattctttatttttatattccttcataacccaaacatcataaccaaaaaccatgcacaaacaat 1937057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 2631408 - 2631358
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||||||    
T  2631408 acaatttagtccaagactcttgatttccatattccttcataatccaaacat 2631358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 3746067 - 3745998
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaa 117  Q
    |||||| ||||||||||||||||||| ||  ||| ||||||| ||||||||||||| ||||| |||||||    
T  3746067 aatagtcaacaatttagtccaagactcttgctttgcatattccttcataatccaaatatcatcaccagaa 3745998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 956441 - 956381
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||| |||||||||||  |||||||| ||| ||||||||||| |||||||||||||||||    
T  956441 aaataatgaacaatttatgccaagactctttttttccatattccttcataatccaaacatc 956381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 783799 - 783850
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||||||||| | |||| ||||||||||||| |||||||||||||||||    
T  783799 acaatttagtccatggctttgtatttccatattccttcataatccaaacatc 783850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 1940570 - 1940637
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattacca 114  Q
    |||||||||||||||||||||| || | || |||||||| ||| ||||||| ||||||||||| ||||    
T  1940570 aaatagtgaacaatttagtccacgagtcttgatttccatgttccttcataacccaaacatcatgacca 1940637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 2456300 - 2456249
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| | ||||||||||||||| ||||||| |||||||||    
T  2456300 acaatttagtccaagagtctttatttccatattccttcataacccaaacatc 2456249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 2686304 - 2686373
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataat---ccaaacatcattacca 114  Q
    |||||||||||||||| ||||||||| ||| ||||||||||| ||||||||   ||||||||||| ||||    
T  2686304 aatagtgaacaatttattccaagactctttttttccatattccttcataataacccaaacatcatcacca 2686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 7324431 - 7324482
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||||| ||||||||| || || |||||||||||||||||    
T  7324431 acaatttagtccaagactctttatttccgtagtccttcataatccaaacatc 7324482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 7334231 - 7334290
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||| |||||||||||||||||| ||||||||| || || ||||| |||||||||||    
T  7334231 aatagtgtacaatttagtccaagactctttatttccgtagtccttcatgatccaaacatc 7334290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 7430536 - 7430587
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||||||| ||||||||||||||||||| |  |||||||||||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatc 7430587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 37753345 - 37753396
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||||| ||| ||||||||||| | |||||||||||||||    
T  37753345 acaatttagtccaagactctttctttccatattcctccataatccaaacatc 37753396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 43992011 - 43991960
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||| |||||||||| | ||||||||||||| |||||||||||||||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatc 43991960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 997623 - 997565
Alignment:
Q  60 tttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    |||||||||||||| ||||||||||||||| ||||| | ||||||| ||| ||||||||    
T  997623 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 997565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 1014013 - 1013955
Alignment:
Q  60 tttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    |||||||||||||| ||||||||||||||| ||||| | ||||||| ||| ||||||||    
T  1014013 tttagtccaagactctttatttccatattccttcattacccaaacaacatcaccagaaa 1013955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Original strand, 1931145 - 1931207
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    |||||||||||||||||||||| || | ||||||||||| |||  |||||| |||||||||||    
T  1931145 aaatagtgaacaatttagtccaggagtctttatttccatgttccatcataacccaaacatcat 1931207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 9561987 - 9562036
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| || ||||||||| || |||||||||||||||||    
T  9561987 aatttagtccaagactcttgatttccatactcattcataatccaaacatc 9562036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 768327 - 768379
Alignment:
Q  54 gaacaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    |||||||||||||||||||| || |||||| || || ||||||||||||||||    
T  768327 gaacaatttagtccaagactcttcatttccgtactcattcataatccaaacat 768379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9587185 - 9587233
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaac 104  Q
    ||||||| ||||||| || ||||||||||||||| ||||||||||||||    
T  9587185 acaattttgtccaaggctctttatttccatattccttcataatccaaac 9587233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 13479638 - 13479590
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcat 95  Q
    |||||||||||||||| |||||||||| || | ||||||||||||||||    
T  13479638 aaatagtgaacaattttgtccaagactcttgaattccatattctttcat 13479590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 754609 - 754660
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||||| || || |||||| || |||||||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatc 754660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 771499 - 771550
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| | | ||||||||||||| ||||||| |||||||||    
T  771499 acaatttagtccaagagtctgtatttccatattccttcataacccaaacatc 771550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 2502207 - 2502148
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||| ||| |||||||||| |||  ||||||||||| || |||||||||||||||||    
T  2502207 aatagtgtacagtttagtccaaaactccttatttccatactccttcataatccaaacatc 2502148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 7942536 - 7942485
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||| ||||||||| |||||| ||||| || |||||||||||||||||    
T  7942536 acaatttaatccaagactctttattaccatactccttcataatccaaacatc 7942485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 2492133 - 2492083
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    |||||||||||||||||| |  ||||||||| || ||||||||||||||||    
T  2492133 acaatttagtccaagactctcgatttccatactccttcataatccaaacat 2492083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 108
Target Start/End: Original strand, 9608346 - 9608396
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    |||||||||||||| | | ||||||||||||| ||||||| ||||||||||    
T  9608346 aatttagtccaagaatctatatttccatattccttcataacccaaacatca 9608396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 23230981 - 23231031
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaaca 105  Q
    ||||||||| ||||||||| || |||||||||||||||||| | |||||||    
T  23230981 aacaatttaatccaagactcttcatttccatattctttcattagccaaaca 23231031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 1897697 - 1897754
Alignment:
Q  76 ttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaat 133  Q
    |||||||||| ||| ||||||||||||||||||| |||| | || ||||| |||||||    
T  1897697 ttatttccatgttccttcataatccaaacatcatgaccaaacaccaggcaaaaacaat 1897754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 1907143 - 1907200
Alignment:
Q  76 ttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaat 133  Q
    |||||||||| ||| ||||||||||||||||||| |||| | || ||||| |||||||    
T  1907143 ttatttccatgttccttcataatccaaacatcatgaccaaacaccaggcataaacaat 1907200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 44001654 - 44001605
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataa 97  Q
    ||||||| ||| |||||||||||||| |||| |||||||||| |||||||    
T  44001654 aatagtgtacagtttagtccaagactctttaattccatattccttcataa 44001605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 1019563 - 1019515
Alignment:
Q  340 ttcaattcaatatcatcttgatcaatttagtaatctcaaaataactatt 388  Q
    |||| |||||||||||| || |||| ||||||||||||||| |||||||    
T  1019563 ttcatttcaatatcatcatgttcaacttagtaatctcaaaagaactatt 1019515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 9594622 - 9594674
Alignment:
Q  54 gaacaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    |||||||||||||||||||| || |||||| || |  ||||||||||||||||    
T  9594622 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 9594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 14888612 - 14888660
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaac 104  Q
    ||||||||||| ||| || ||||||| ||||||| ||||||||||||||    
T  14888612 acaatttagtctaaggctctttattttcatattcattcataatccaaac 14888660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 47 - 134
Target Start/End: Complemental strand, 19727941 - 19727854
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaacgaggcacaaacaatt 134  Q
    |||||||||||| ||||||||| |||| ||||||| |||||||| |||||| ||||||||||| ||||||||| | ||||||||||||    
T  19727941 aaatagtgaacagtttagtccatgactctttatttgcatattctgtcataacccaaacatcatcaccagaaaccatgcacaaacaatt 19727854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 51381447 - 51381507
Alignment:
Q  48 aatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||    
T  51381447 aatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatca 51381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 24513106 - 24513053
Alignment:
Q  57 caatttagtccaagactttttatttccatattctttcataatccaaacatcatt 110  Q
    ||||||| |||| |||| |||| |||||||||||||||||| ||||||||||||    
T  24513106 caatttaatccatgactctttacttccatattctttcataagccaaacatcatt 24513053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 51854999 - 51854946
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||| | |  |||||||||||||||||| ||||||||||||    
T  51854999 aacaatttagtccaagattctacatttccatattctttcatgatccaaacatca 51854946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 51832425 - 51832377
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    ||||||||||||||||| | || |||||||||||||||||| |||||||    
T  51832425 aacaatttagtccaagattgttcatttccatattctttcattatccaaa 51832377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 24246506 - 24246549
Alignment:
Q  65 tccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||||    
T  24246506 tccaagactctttatttccgtattctttcataagccaaacatca 24246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 51782848 - 51782797
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaacatcat 109  Q
    |||||| ||||||| | || |||||||||||| |||||||||||||||||||    
T  51782848 aatttattccaagattgttcatttccatattccttcataatccaaacatcat 51782797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 66 - 108
Target Start/End: Original strand, 23896147 - 23896189
Alignment:
Q  66 ccaagactttttatttccatattctttcataatccaaacatca 108  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||    
T  23896147 ccaagactctttatttccatattccttcataagccaaacatca 23896189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 51407558 - 51407604
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatcca 101  Q
    ||||||||||||||||||| || ||| |||||||| |||||||||||    
T  51407558 aacaatttagtccaagactgttcattcccatattccttcataatcca 51407604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 51756749 - 51756802
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  51756749 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 51756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 51858658 - 51858605
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  51858658 aacaatttagtccaagattctacatttccatattccttcatgatccaaacatca 51858605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 20019767 - 20019834
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    ||||||||||||||||||||||| || | |||||||||| ||||| | ||||||||||||||||||||    
T  20019767 agtgaacaatttagtccaagactcttgaattccatattccttcatgacccaaacatcattaccagaaa 20019834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 20016180 - 20016248
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcataatcc-aaacatcattaccagaaa 118  Q
    ||||||||||||||||||||||| || | |||||||||| ||||| |||| ||||||||||||||||||    
T  20016180 agtgaacaatttagtccaagactcttgaattccatattccttcatgatccaaaacatcattaccagaaa 20016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 22672118 - 22672189
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaacatcattaccagaaa 118  Q
    ||||||||||||||||||||||||| |  |||||||||||||| ||||| | |||||| || | ||||||||    
T  22672118 aaatagtgaacaatttagtccaagattccttatttccatattccttcattacccaaacgtcgtcaccagaaa 22672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 24417486 - 24417536
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacat 24417536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 19119115 - 19119065
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaaca 105  Q
    ||||||||||||||||||| || |||||||||||| ||||| | |||||||    
T  19119115 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19119065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 19126409 - 19126359
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaaca 105  Q
    ||||||||||||||||||| || |||||||||||| ||||| | |||||||    
T  19126409 aacaatttagtccaagactcttcatttccatattccttcatcaaccaaaca 19126359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 176390 - 176345
Alignment:
Q  51 agtgaacaatttagtccaagactttttatttccatattctttcata 96  Q
    ||||||||||||||||||||| | |||||||||||| || ||||||    
T  176390 agtgaacaatttagtccaagaatctttatttccataatcattcata 176345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 370776 - 370833
Alignment:
Q  47 aaatagtgaacaatttagtccaagactttttatttccatattctttcataatccaaac 104  Q
    ||||| ||||||||||||||||||| | |||||||||||| |  ||||||| ||||||    
T  370776 aaatattgaacaatttagtccaagaatctttatttccataattcttcataacccaaac 370833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 4183000 - 4183053
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  4183000 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 4743844 - 4743897
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||| | |  |||||||||||| ||||| ||||||||||||    
T  4743844 aacaatttagtccaagattgtccatttccatattccttcatgatccaaacatca 4743897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 9825517 - 9825562
Alignment:
Q  58 aatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    |||||||||||||| ||| ||||||||||||| ||||||| |||||    
T  9825517 aatttagtccaagagtttctatttccatattccttcataagccaaa 9825562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 17368418 - 17368365
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||||||||||||||  || ||||||||| |||||||| | ||||||||||    
T  17368418 aacaatttagtccaagacccttcatttccatactctttcatcagccaaacatca 17368365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 1459540 - 1459588
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    ||||||||||||||||| | |||||||||| | |||||||||| |||||    
T  1459540 aacaatttagtccaagattctttatttccaaaatctttcataacccaaa 1459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 1470922 - 1470970
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    |||||||||| |||||| | |||||||||||| |||||||||| |||||    
T  1470922 aacaatttagaccaagaatctttatttccataatctttcataacccaaa 1470970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 33038211 - 33038159
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||||||||    
T  33038211 acaatctagtccaagactttttgtttccatattccttcataatccaaacatca 33038159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 36577418 - 36577366
Alignment:
Q  55 aacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||    
T  36577418 aacaatttaatccaagactctttatttccatattccttcataatccaaacatc 36577366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 34560917 - 34560968
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  34560917 acaatttagtccaagattttttatttccatattctttcataattgaaacatc 34560968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 56 - 106
Target Start/End: Complemental strand, 33020364 - 33020314
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacat 106  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||| ||||    
T  33020364 acaatctagtccaagactttttatttccatattccttcataatccacacat 33020314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 33026708 - 33026657
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    ||||| |||||||||||||||||||||||||||  ||||||| |||||||||    
T  33026708 acaatctagtccaagactttttatttccatattgcttcataacccaaacatc 33026657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 7168688 - 7168738
Alignment:
Q  54 gaacaatttagtccaagactttttatttccatattctttcataatccaaac 104  Q
    |||||||||||||||||| |  |||||||||||||| ||||||| ||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccatattccttcataagccaaac 7168738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 7160752 - 7160805
Alignment:
Q  54 gaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||||| |  ||||||||||| || ||||||| |||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccatactccttcataagccaaacatc 7160805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 6538888 - 6538844
Alignment:
Q  53 tgaacaatttagtccaagactttttatttccatattctttcataa 97  Q
    ||||||||||||||||||| | |||||||||||| || |||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccatactccttcataa 6538844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 89194 - 89142
Alignment:
Q  56 acaatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    |||||||||||||||||| ||||||||||||||| ||||||| ||||| ||||    
T  89194 acaatttagtccaagactctttatttccatattccttcataacccaaatatca 89142  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 3927112 - 3927063
Alignment:
Q  54 gaacaatttagtccaagactttttatttccatattctttcataatccaaa 103  Q
    |||||||||||||||||| |||||||||||||| || ||||||| |||||    
T  3927112 gaacaatttagtccaagaatttttatttccataatccttcataacccaaa 3927063  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 1078157 - 1078211
Alignment:
Q  53 tgaacaatttagtccaagactttttatttccatattctttcataatccaaacatc 107  Q
    |||||||||||||||| |||| | |||||||||| || ||||||| |||||||||    
T  1078157 tgaacaatttagtccacgactctctatttccatactccttcataacccaaacatc 1078211  T

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Target: scaffold0015 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 32330 - 32381
Alignment:
Q  57 caatttagtccaagactttttatttccatattctttcataatccaaacatca 108  Q
    ||||||| ||||||| | ||||||||||||||| ||||||| ||||||||||    
T  32330 caatttaatccaagagtctttatttccatattccttcataagccaaacatca 32381  T

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