View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_high_7 (Length: 584)
Name: NF15135_high_7
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Original strand, 5166034 - 5166598
Alignment:
| Q |
18 |
tgatgaagttggaagagaggtctagggtttgaagattggtacagttggagagaaagggagatattgttccacggagagagagattgttgagcgagagttt |
117 |
Q |
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| T |
5166034 |
tgatgaagttggaagagaggtctagggtttgaagattggtacagttggagagaaagggagagattgttccacggagagagagattgttgagcgagagttt |
5166133 |
T |
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| Q |
118 |
gtagattctgccattgttgcagagtattcctttgagagttgaggttgattcattgcagggttttgagaaagtggcttcgttccaattttctaaggatttg |
217 |
Q |
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| T |
5166134 |
gtagattctgccattgttgcagagtattcctttgagagttgaggttgattcattgcagggttttgagaatgtggcttcgttccaattttctaaggatttg |
5166233 |
T |
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| Q |
218 |
tttgggtcttgtagtgatttgtttaaatgggttaaacatgcttcatcgcttggatctgatttaattgatgtgattaatgtaatccaaaacattaatacta |
317 |
Q |
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| T |
5166234 |
tttgggtcttgcagtgatttgtttaaatgggttaaacatgcttcatcgcttggatctgatttaattgatgtgattaatgtaatccacaacattaatacta |
5166333 |
T |
|
| Q |
318 |
acttcattaaacatgctacatccatctatttccaaataaacaaacttctaattctggatttcttgctttgagttgagattgaagttattgagatttggaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5166334 |
acttcattaaacatgctacatccatctatttccaaataaacaaccttctaattctggatttcttgctttgagttgagattgaagttatagagatttggaa |
5166433 |
T |
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| Q |
418 |
attggaaaagggtttatttgtaattacaatttaacccttttcttcattttgatg-----gaggtgaggtgaggtgattgaaaggaaagtggagaaagtga |
512 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
5166434 |
attgaaaaagggtttatttgtaattactatttaacccttttcttcattttgatggaggtgaggtgaggtgaggtgattgaagggaaagtggagaaagtga |
5166533 |
T |
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| Q |
513 |
gagacgtgtctttgttatatgatgatgttaggggaggtttgaaagagagagatttgggggactct |
577 |
Q |
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| T |
5166534 |
gagatgtgtctttgttatatgatgatgttaggggaggtttgaaagagagagatttgggggactct |
5166598 |
T |
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