View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15135_high_8 (Length: 583)
Name: NF15135_high_8
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_high_8 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 8855754 - 8856208
Alignment:
| Q |
7 |
ggatagttatacaacttgagtatttgaataaataaaaaacaaaacttgctgtaacaggaagcaacttcttatatataaatagtagtaataaacatttcaa |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| || |
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|
| T |
8855754 |
ggatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgctgtaacagaaagcaacttcttatatata-------gtaataaacattttaa |
8855846 |
T |
|
| Q |
107 |
gtgcaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaa |
206 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
8855847 |
gtacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataataatataaaaggattatccattcgacgcatataacaa |
8855946 |
T |
|
| Q |
207 |
ccgtgctccaaaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8855947 |
ccgtgctccaaaatcatgtgatgggagg---gataggtaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
8856043 |
T |
|
| Q |
307 |
ggtagctatttgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa-------------- |
391 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
8856044 |
ggtagcta-ttgcataaacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaatcaaaaatactagtttgg |
8856142 |
T |
|
| Q |
392 |
---acaaaacaaaatttcagtatgaggtataccacgtcataaaaaggaaataatgacaatctacta |
454 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
8856143 |
ttcacaaaacaaagttctagtatgaggtataccacggcataaaaaggaaataatgacaatctacta |
8856208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 453 - 528
Target Start/End: Original strand, 8856293 - 8856368
Alignment:
| Q |
453 |
tactgaactgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaa |
528 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8856293 |
tactgaaccgccgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaa |
8856368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 487
Target Start/End: Original strand, 8856225 - 8856259
Alignment:
| Q |
453 |
tactgaactgccgaaacgataaagttatgaagtta |
487 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
8856225 |
tactgaaccgccgaaacgataaagttatgaagtta |
8856259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 528 - 568
Target Start/End: Original strand, 8856381 - 8856421
Alignment:
| Q |
528 |
acaattttgtcttgattctcaagcgattagtatcttcaaga |
568 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
8856381 |
acaattttgtcttgattctcaggtgattagtaacttcaaga |
8856421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 568
Target Start/End: Original strand, 19576141 - 19576739
Alignment:
| Q |
8 |
gatagttatacaacttgagtatttgaataaataaaaaacaaaacttgctgtaacaggaagcaacttcttatatataaatagtagtaataaacat-ttcaa |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || || |
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|
| T |
19576141 |
gatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgttgtaacaggaagcaacttcttatatata-------gtaataaacatctttaa |
19576233 |
T |
|
| Q |
107 |
gtgcaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |
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|
| T |
19576234 |
gcacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaa |
19576332 |
T |
|
| Q |
207 |
ccgtgctccaaaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
306 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19576333 |
ctgtgctccaaaatcatgtgatgggagg---gatagacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
19576429 |
T |
|
| Q |
307 |
ggtagctatttgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa-------------- |
391 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
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|
| T |
19576430 |
ggtagcta-ttgcataaacaaaggcaactgaagcatcttaaattgctaaatattgaagtaaataaacaaatccttaaattaacccaaatacgagtttggt |
19576528 |
T |
|
| Q |
392 |
--acaaaacaaaatttc-agtatgaggtataccacgtcataaaaaggaaataatgacaatctac------------------tactgaactgccgaaacg |
470 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||| |
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|
| T |
19576529 |
tcacaaaacaaaaattcgagtatgaggtataccacgccataaaaaggaaaaaatgacaatctactaaatttagcaataagtatactgaaccgccgaaacg |
19576628 |
T |
|
| Q |
471 |
ataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaa-------------acaattttgtcttgattctcaagcgattag |
557 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
19576629 |
ataaagttatgaagttataaaatcttataagtatagtcttccatggaaatctagtaaaaagaaaataaccacaattttgtcttgattctcaggcgattag |
19576728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 14367404 - 14366860
Alignment:
| Q |
8 |
gatagttatacaacttgagtatttgaataaataaaaaacaaaacttgctgtaacaggaagcaacttcttatatataaatagtagtaataaacat-ttcaa |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
14367404 |
gatagttatacgacttgagtatttgaataaacaaaaaacaaaacttgttgtaacaggaagcaacttcttatatatt-------gtaataaacatctttaa |
14367312 |
T |
|
| Q |
107 |
gtgcaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcatataacaa |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14367311 |
gcacaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccttataaaaatataaa-ggattatccattcgacgcatataacaa |
14367213 |
T |
|
| Q |
207 |
ccgtgctccaaaatcatgtgatgggaggagggatatacaaatctttaaattagttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
306 |
Q |
| |
|
| |||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14367212 |
ctgtgctccaaaatcatgtgatgggagg---gatagacaaatctttaaatttgttttcatgaaagcatcaaacagtatgatcttttaccctatattttat |
14367116 |
T |
|
| Q |
307 |
ggtagctatttgcat-aacaaaggcgactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaa-------------- |
391 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14367115 |
ggtagcta-ttgcataaacaaaggcaactgaagcatcttaaattgccaaatattgaagtaaataaacaaatccttaaattaaccaaatacgagtttggtt |
14367017 |
T |
|
| Q |
392 |
-acaaaac-aaaatttcagtatgaggtataccacgtcataaaaaggaaataatgacaatctac------------------tactgaactgccgaaacga |
471 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| || | ||||||||||| |||||||| |||||||||| |
|
|
| T |
14367016 |
cacaaaacaaaaattccagtatgaggtataccacgtcataaaaagggaaaagtgacaatctactaaatttagcaataagtatactgaaccgccgaaacga |
14366917 |
T |
|
| Q |
472 |
taaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaa |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14366916 |
taaagttatgaagttataaaatcttataagtatagtcttccatggaaatctagtaaa |
14366860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 170
Target Start/End: Complemental strand, 25556138 - 25556017
Alignment:
| Q |
43 |
aaacaaaacttgct-gtaacaggaagcaacttcttatatataaatagtagtaataaacatttcaagtgcaatactacatgaacttgagagtcaataacca |
141 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||| |||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
25556138 |
aaacaaaacctgcttgtaacagaaagcaacttcttatat-------gtagtaataaacattttaagtacaatcctacatgaacttgagagtcaataacca |
25556046 |
T |
|
| Q |
142 |
tatgctaagaatatctcagaccgtataat |
170 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
25556045 |
tatgctaagaatatctcagaccttataat |
25556017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 26383530 - 26383272
Alignment:
| Q |
1 |
tgacttggatagttatacaacttgagtatttgaataaataaaaaacaaaacttgctgtaacaggaagcaacttcttatatataaatagtagtaataaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26383530 |
tgacttggatagttatacaacttgagtatttgaataaacaaaaaacaaaacttgctgtaacaggaagcaacttcttatatataaatagtagtaataaaca |
26383431 |
T |
|
| Q |
101 |
tttcaagtgcaatactacatgaacttgagagtcaataaccatatgctaagaatatctcagaccgtataatgatataaaaggattatccattcgacgcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26383430 |
tttcaagtgcaatactacatgaacttgagactcaataaccatatgctaagaatatctcagaccgtataataatataaaaggattatccattcgacgcata |
26383331 |
T |
|
| Q |
201 |
taacaaccgtgctccaaaatcatgtgatgggaggagggatatacaaatctttaaattag |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26383330 |
taacaaccgtgctccaaaatcatgtgatgggaggagggatagacaaatctttaaattag |
26383272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 464 - 568
Target Start/End: Complemental strand, 26382878 - 26382774
Alignment:
| Q |
464 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaacaattttgtcttgattctcaagcgattagtatctt |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26382878 |
cgaaacgataaagttatgaagttataaaatcttataagtatagtcttccatggacatctagtaaacaattttgtcttgattctcaaacgattagtatctt |
26382779 |
T |
|
| Q |
564 |
caaga |
568 |
Q |
| |
|
||||| |
|
|
| T |
26382778 |
caaga |
26382774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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