View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15135_low_1 (Length: 1148)
Name: NF15135_low_1
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_1 |
 | |
|
| [»] scaffold0057 (3 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 17 - 714
Target Start/End: Complemental strand, 39363108 - 39362429
Alignment:
| Q |
17 |
caaaactcatggaagttttatcgtcattatatccttatatgcccacctctaataatttcacacatagaatatttgggtgtacgtcgtttgtctatatcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39363108 |
caaaactcatggaagttttatcgtcattatatccttatatgcccacctctaataatttcacacataaaatatttgggtgtacgtcgtttgtctatatcca |
39363009 |
T |
|
| Q |
117 |
aagtgatggtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccactatct |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39363008 |
aagtgatggtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccaccatct |
39362909 |
T |
|
| Q |
217 |
aataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctgggggagactataagtaaggaaatgagtt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362908 |
cataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctgggggagactataagtaaggaaatgagtt |
39362809 |
T |
|
| Q |
317 |
tcttctacttcccgaccttactttcaggccaaaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362808 |
tcttctacttcccgaccttactttcaggccaaaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttg |
39362709 |
T |
|
| Q |
417 |
aagttgatgtaagatatgaaaagaatttggtatatactagaaaaaagatcattcctgaatctaatcatatccaagataccataattagtggaggatcaac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39362708 |
aagttgatgtaagatatgaaaagaatttggtatatactagaaaaaagttcattcctgaatctaatcatatccaagataccataattagtggaggatcgac |
39362609 |
T |
|
| Q |
517 |
tctttgtctagtgagtcaatcacggggcagcaagccggtcactctgtgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattc |
616 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39362608 |
tctttgtccagtgagtcaatcacggggcagcaagccggtcactctgcgatccgacattacacgatgtaacttcacttgaccctataaattctagtgattc |
39362509 |
T |
|
| Q |
617 |
aatttctaaattttctcatccacatgaaccagaatgtaactcattgttacataaggaaccagaatccagcctaataaagcataagaaaccaaaatcca |
714 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362508 |
aatttctaaattttct------------------agtgactcattgttacataaggaaccagaatccagcctaataaagcataagaaaccaaaatcca |
39362429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 666 - 1132
Target Start/End: Complemental strand, 39362447 - 39361966
Alignment:
| Q |
666 |
cataaggaaccagaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccctaa |
765 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362447 |
cataagaaaccaaaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccctaa |
39362348 |
T |
|
| Q |
766 |
ggaaagataccagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcacaag |
865 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362347 |
tgaaagatatcagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcacaag |
39362248 |
T |
|
| Q |
866 |
tctaaacactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcactcaataaaaac |
965 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362247 |
tctaaacactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcactcaataaaaac |
39362148 |
T |
|
| Q |
966 |
caatggaaactttataagatctcaaagataacttacatgaaaacaatttgacttttattatgaaaatagcttatacataagtg---------------ct |
1050 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39362147 |
caatggaaactttataagatctcaaagataacttacatgaaaacaatttgacttttattatgaaaatagcttatacataagtgcttatgctataagtgct |
39362048 |
T |
|
| Q |
1051 |
taattaaaatgtttatccaaacttggcacaattcacaagtacacttaggacttataaacacatatcactcataccttccaat |
1132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39362047 |
taattaaaatgtttatccaaacttggcacaattcacaagtacacttaggacttataaacacatatcactcataccttccaat |
39361966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 796 - 955
Target Start/End: Original strand, 3007489 - 3007648
Alignment:
| Q |
796 |
cactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcacaagtctaaacactaccacaatacctacctcttt |
895 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| | |||||| | ||| |||| | ||||||||| | ||||||||||||| || ||||||||||| |
|
|
| T |
3007489 |
cactctaccttctatccaactagatatgctttgaaaaattatcacctacctataaggtcttcctcaccaacctaaacactaccattatgcctacctcttt |
3007588 |
T |
|
| Q |
896 |
atctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcact |
955 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||| || ||||||| | |||||| |
|
|
| T |
3007589 |
atctgaggcattgtctgacagaaaatggaaacaaaccatggacatggaaattgtggcact |
3007648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 29442343 - 29442235
Alignment:
| Q |
27 |
ggaagttttatcgtcattatatccttatatgcccacctctaataatttcacacatagaatatttgggtgtacgtcgtttgtctatatccaaagtgatggt |
126 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| || |||||| |||| | ||||||| |||||||||| || |||||| ||||||| ||||||||| |
|
|
| T |
29442343 |
ggaagttttatcgtcattctatccttatatgcccacttccaataatctcactcctagaata-ttgggtgtacctcatttgtccatatccatagtgatggt |
29442245 |
T |
|
| Q |
127 |
agaagcaaac |
136 |
Q |
| |
|
||||| |||| |
|
|
| T |
29442244 |
agaagtaaac |
29442235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 1043 - 1132
Target Start/End: Complemental strand, 39347487 - 39347399
Alignment:
| Q |
1043 |
taagtgcttaattaaaatgtttatccaaacttggcacaattcacaagtacacttaggacttataaacacatatcactcataccttccaat |
1132 |
Q |
| |
|
|||||||||||||||| |||||||||| ||| ||||||| |||||||||||| | |||||||||||||||||| || | ||||||||||| |
|
|
| T |
39347487 |
taagtgcttaattaaactgtttatccatactcggcacaaatcacaagtacac-tgggacttataaacacatatgacccttaccttccaat |
39347399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1048 - 1132
Target Start/End: Complemental strand, 39336218 - 39336134
Alignment:
| Q |
1048 |
gcttaattaaaatgtttatccaaacttggcacaattcacaagtacacttaggacttataaacacatatcactcataccttccaat |
1132 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||||| |||||||||| |||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
39336218 |
gcttaattaaactgtttttccatactgggcacaaatcacaagtacgcttaggacttataaactcatatcacccttaccttccaat |
39336134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1042 - 1132
Target Start/End: Original strand, 39566346 - 39566436
Alignment:
| Q |
1042 |
ataagtgcttaattaaaatgtttatccaaacttggcacaattcacaagtacacttaggacttataaacacatatcactcataccttccaat |
1132 |
Q |
| |
|
||||||||||||||||| |||||| |||||| | |||||||||| ||||||||||||||||||| ||||||||||| |||||| |||| |
|
|
| T |
39566346 |
ataagtgcttaattaaactgtttacccaaacaggacacaattcactgttacacttaggacttataaaaacatatcactcttacctttcaat |
39566436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 295
Target Start/End: Original strand, 31356123 - 31356285
Alignment:
| Q |
133 |
aaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccactatctaataagtattttgtct |
232 |
Q |
| |
|
||||||||| ||||||||||||| |||| ||||||||||| || ||||| ||||| | |||| |||||||||||||| ||| |||| | ||||| | |
|
|
| T |
31356123 |
aaacttgattctagagccttaaaatgtgcttttatagggtactcttccacacaaaaggactacaaatgttatcatccaccatcccataaattctttgtat |
31356222 |
T |
|
| Q |
233 |
gttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctgggggaga |
295 |
Q |
| |
|
|||| ||| | || ||||| |||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
31356223 |
ccagagaagtcgcatttcatgagaaagaaagttactttcatcaaactcatctttagggggaga |
31356285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 563 - 640
Target Start/End: Original strand, 3007321 - 3007398
Alignment:
| Q |
563 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccaca |
640 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||| ||| ||| |||||| ||||||| ||||||||||| |||| |
|
|
| T |
3007321 |
tgatccgacattacatgagctaactttacttgacccttcaaattcttgtgatttaatttctgaattttctcatgcaca |
3007398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-118
Query Start/End: Original strand, 25 - 434
Target Start/End: Original strand, 50058940 - 50059354
Alignment:
| Q |
25 |
atggaagttttatcgtcattatatccttatatgcccacctctaataatttcacacatagaatatttgggtgtacgtcgtttgtctatatccaaagtgatg |
124 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
50058940 |
atggaagttttatcgtcgttatatccttatatgcccacctccaataatctcactcctagaatatttgggtgtacgtcgtttgtccatatccatcgtgatg |
50059039 |
T |
|
| Q |
125 |
gtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccactatctaataagta |
224 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||| |||||| |
|
|
| T |
50059040 |
gtagaagtaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaagggttacagatgttatcatcctcaatctcgtaagta |
50059139 |
T |
|
| Q |
225 |
ttttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctggggg---agactataagtaaggaa-atgagtttctt |
320 |
Q |
| |
|
||||| | | ||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
50059140 |
ctttgtttctcgagatgtcacctttcatgaacaagaaagttatttttttcaaactcatcttcagggggagaagaatataagtaaggaagatgagtctctt |
50059239 |
T |
|
| Q |
321 |
ctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaag |
419 |
Q |
| |
|
||||||| |||||||||||| | ||| || ||||| |||||||| ||||||| |||||||| | ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
50059240 |
atacttcctgaccttactttcggaccagaagttgagtctgaaactggaggtaatgatgttgagtctgaagttgattctgaaaatcatgtaaatgttgaag |
50059339 |
T |
|
| Q |
420 |
ttgatgtaagatatg |
434 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50059340 |
ctgatgtaagatatg |
50059354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 563 - 965
Target Start/End: Original strand, 50059419 - 50059821
Alignment:
| Q |
563 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattg |
662 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
50059419 |
tgatccgacattacatgaggtaactttgcttgacccttcaaattcttgtgattcaatttctgaattttctcatgcacatgaaccagaatctaactcatca |
50059518 |
T |
|
| Q |
663 |
ttacataaggaaccagaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccc |
762 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||| ||||||||||||||| | |||| ||||||| || | | | |||| ||| |||||||| |||||| |
|
|
| T |
50059519 |
tcacataaggaaccagaaaccagcccaataaagtgtaagaaaccaaaatctagagaagtaccaccaatagattctgaagacttacatcttccagttgccc |
50059618 |
T |
|
| Q |
763 |
taaggaaagataccagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcac |
862 |
Q |
| |
|
| || |||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||| |
|
|
| T |
50059619 |
ttagaaaagatactagaacctgtaccaaaaatccactctaccctctatccaacttcctatgctttgaacaattatcacctacctataaagccttcctcac |
50059718 |
T |
|
| Q |
863 |
aagtctaaacactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcactcaataaa |
962 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| ||| | | ||| |||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
50059719 |
aagtctaaatactaccacaatacctacatctttatctgaggcgttgtctgccaggaaatggaaacaagccatggacttggaaattgaggcacttgataaa |
50059818 |
T |
|
| Q |
963 |
aac |
965 |
Q |
| |
|
||| |
|
|
| T |
50059819 |
aac |
50059821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 28 - 434
Target Start/End: Complemental strand, 28094474 - 28094066
Alignment:
| Q |
28 |
gaagttttatcgtcattatatccttatatgcccacctctaataatttcacacatagaatatttgggtgtacgtcgtttgtctatatccaaagtgatggta |
127 |
Q |
| |
|
||||||||| | || || ||||||||| | |||||||| |||||| |||| | ||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
28094474 |
gaagttttaccatcgttctatccttatgttcccacctcaaataatctcactcctagaatatttgggtgcacgtcgtttgtccatatccatagtgatggta |
28094375 |
T |
|
| Q |
128 |
gaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccactatctaataagtattt |
227 |
Q |
| |
|
|||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| | |||| |||||| || |
|
|
| T |
28094374 |
gaagtaaatttgatcatagagccttaaagtgtgtctttataaggtattcctccactcaaaagggttacagatgttatcatcctccatctcgtaagtactt |
28094275 |
T |
|
| Q |
228 |
tgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaa----ctcatcttctgggggagactataagtaaggaaatgagtttcttcta |
323 |
Q |
| |
|
||| | | |||||||||| |||||||||||||||||||| |||| ||||| |||||||| ||||| | |||||| ||| |||| | ||||||| |
|
|
| T |
28094274 |
tgtttctcgagatgtcactttccatgaacaagaaagttattttggtcaaaattgatcatcttcagggggtaaatataaggaag---atgaatctcttcta |
28094178 |
T |
|
| Q |
324 |
cttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttg |
422 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||| ||||||| ||||| ||||||||||||| | ||||||| |||||| ||| ||||||||||| || |
|
|
| T |
28094177 |
cttcttgaccttactttcgggccagaaattgaggttgaaactggaggtgacaatgttgagacggatgttgattctgaaaatcatgtaaatgttgaagctg |
28094078 |
T |
|
| Q |
423 |
atgtaagatatg |
434 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
28094077 |
atataagatatg |
28094066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 4e-78
Query Start/End: Original strand, 25 - 492
Target Start/End: Original strand, 2412825 - 2413294
Alignment:
| Q |
25 |
atggaagttttatcgtcattatatccttatatgcccacctctaataatttcacacatagaatatttgggtgtacgtcgtttgtctatatccaaagtgatg |
124 |
Q |
| |
|
|||||||||||||| ||||| |||||| || || | |||||||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
2412825 |
atggaagttttatcctcattctatcctgatttgtctacctctaataatctcacccctagaatatttgggtgtacgtcgtttgtccatatccatagtgatg |
2412924 |
T |
|
| Q |
125 |
gtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctccactcaaaaaggttacatatgttatcatccactatctaataagta |
224 |
Q |
| |
|
||||| | ||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||| ||||||| |||||||||||| | || | || | |
|
|
| T |
2412925 |
gtagagggaaacttgatcctagagctttaaaatgtgtctttatagggtatttttccacccaaaagggttacaaatgttatcatcctc---ctcacaaatt |
2413021 |
T |
|
| Q |
225 |
ttttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttctgggggagactataagtaaggaa-atgagtttcttcta |
323 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || | | |||||||| || ||| |||| || |
|
|
| T |
2413022 |
ctttgtctctcgagatgtcaccttccatgaacaagaaagttactttgttcaaactcatcttcaggggtagtattcatgtaaggaagataagtctctttta |
2413121 |
T |
|
| Q |
324 |
cttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttg |
422 |
Q |
| |
|
|||| ||||||| | | | ||| || |||||| ||||||| || || ||||||||||||| ||||||||| |||||| ||| |||||||||| | |
|
|
| T |
2413122 |
cttcatgaccttaatctaggaccagaagttgaggttgaaactggaagtgacaatgttgagacggaagttgattttgaaaatcatgttaatgttgaagccg |
2413221 |
T |
|
| Q |
423 |
atgtaagatatgaaaagaattt---ggtatatactagaaaaaagatcattcctgaatctaatcatatccaaga |
492 |
Q |
| |
|
|||||||||||| || ||| | | | ||||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
2413222 |
atgtaagatatgggaaaaatataaggatttatacacgaagaaagaccattcctgaatctactcatatccaaga |
2413294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 4e-72
Query Start/End: Original strand, 563 - 961
Target Start/End: Original strand, 2413298 - 2413696
Alignment:
| Q |
563 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattg |
662 |
Q |
| |
|
||||||||||||||| || ||||||| ||||||||| ||| ||| |||| ||||||||| ||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
2413298 |
tgatccgacattacatgaggtaactttgcttgacccttcaaattcttgtgactcaatttctgaattttctcatgcacatgaactagaatctaactcatcc |
2413397 |
T |
|
| Q |
663 |
ttacataaggaaccagaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccc |
762 |
Q |
| |
|
| |||| ||||||||||||| |||| ||| |||||||| ||||| | |||| ||||||| || | | |||||| ||| |||||||| |||||| |
|
|
| T |
2413398 |
actcccgaggagccagaatccagcccaatagagcgtaagaaacgaaaatttagagaagtaccaccaatagattctaaagacttacatcttccagttgccc |
2413497 |
T |
|
| Q |
763 |
taaggaaagataccagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcac |
862 |
Q |
| |
|
| || |||||| | ||||| ||||||| ||| |||| ||||||||||| || | |||| ||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
2413498 |
ttagaaaagatcctagaacttgtaccaataagccactttatcctctatctaattacctacgctttgaacagttatcagctacctataaagccttcctcac |
2413597 |
T |
|
| Q |
863 |
aagtctaaacactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcactcaataa |
961 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
2413598 |
caacctaaacactaccattatacccacctctttatctgaggcattgtctgacaggaaatggaaacaagccatgaacatggaaatggaggcacttaataa |
2413696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 563 - 955
Target Start/End: Original strand, 41897076 - 41897468
Alignment:
| Q |
563 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattg |
662 |
Q |
| |
|
||||||||||||||| || |||| || ||||||||| ||| ||| |||| ||||||||| ||||||||||| ||||||||| ||||| |||||||| |
|
|
| T |
41897076 |
tgatccgacattacatgaggtaagtttgcttgacccttcaaattcttgtgactcaatttctgaattttctcatgcacatgaactagaatctaactcatcc |
41897175 |
T |
|
| Q |
663 |
ttacataaggaaccagaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccc |
762 |
Q |
| |
|
|| |||| ||||||||||||| |||| || |||||||| |||||| | |||| ||||||| || | | |||||| ||| |||||||| |||||| |
|
|
| T |
41897176 |
acacccgaggagccagaatccagcccaatagagtgtaagaaacgaaaatctagagaagtaccaccaatagattctaaagacttacatcttccagttgccc |
41897275 |
T |
|
| Q |
763 |
taaggaaagataccagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcac |
862 |
Q |
| |
|
| || || ||| | ||||| ||||| | ||| |||||||||||||||| || | |||||||||||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
41897276 |
ttagaaaggatcctagaacttgtacaaataagccactctatcctctatctaattacctatgctttgaacagttatcacctacctataaagccttcctcac |
41897375 |
T |
|
| Q |
863 |
aagtctaaacactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcact |
955 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
41897376 |
caacctaaacactaccattatacccacctctttatctgaggcattgtctgacaggaaatggaaacaagccatggacatggaaatggaggcact |
41897468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 81 - 434
Target Start/End: Original strand, 41896656 - 41897011
Alignment:
| Q |
81 |
tagaatatttgggtgtacgtcgtttgtctatatccaaagtgatggtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctcc |
180 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||||| |||| | ||||||||||||||||| ||||| |||||||||||||||||||| | | |
|
|
| T |
41896656 |
tagaatatttaggtgtacgtcgtttgtccatatccatagtgatgatagagggaaacttgatcctagagctttaaaatgtgtctttatagggtattctttc |
41896755 |
T |
|
| Q |
181 |
actcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactc |
280 |
Q |
| |
|
|| ||||| ||||||| |||||||||||| | |||| | || | ||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
41896756 |
acccaaaagggttacaaatgttatcatcctccatctcacaaattctttgtctctcgagatgtcaccttccatgaacaagaaatttactttgttcaaactc |
41896855 |
T |
|
| Q |
281 |
atcttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgt |
378 |
Q |
| |
|
|||||| ||||||| | | |||||||| |||||| |||| |||| | ||||||| | | | ||| || |||||| ||||||| || || ||||||| |
|
|
| T |
41896856 |
atcttcagggggagtattcatgtaaggaagatgagtctcttttactacatgaccttaatctaggaccagaagttgaggttgaaactggaagtgacaatgt |
41896955 |
T |
|
| Q |
379 |
tgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaagatatg |
434 |
Q |
| |
|
|||||| ||||||||| |||||| | | |||||||||| ||||||||||||| |
|
|
| T |
41896956 |
tgagacggaagttgattctgaaaatcaagttaatgttgaagccgatgtaagatatg |
41897011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 492 - 559
Target Start/End: Original strand, 39499997 - 39500064
Alignment:
| Q |
492 |
ataccataattagtggaggatcaactctttgtctagtgagtcaatcacggggcagcaagccggtcact |
559 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39499997 |
ataccataattagtggatgttcgactctttgtctagtgagtcaatcacggggcagcaagccggtcact |
39500064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 23055448 - 23055403
Alignment:
| Q |
25 |
atggaagttttatcgtcattatatccttatatgcccacctctaata |
70 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
23055448 |
atggaagttttatcgtcgttctatccttatatgcccacctccaata |
23055403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 9e-67; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 9e-67
Query Start/End: Original strand, 81 - 419
Target Start/End: Original strand, 6721839 - 6722173
Alignment:
| Q |
81 |
tagaatatttgggtgtacgtcgtttgtctatatccaaagtgatggtagaagcaaacttgatcctagagccttaaagtgtgtctttatagggtattcctcc |
180 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
6721839 |
tagaatagttgggtgtacatcgtttgtccatatccatagtgatggtagagggaaacttgatcctagagccttaaaatgtgtctttatagggtattcttcc |
6721938 |
T |
|
| Q |
181 |
actcaaaaaggttacatatgttatcatccactatctaataagtattttgtctgttgagatgtcaccttccatgaacaagaaagttactttgttcaaactc |
280 |
Q |
| |
|
|| ||||| ||||||| ||||||||||||||||||| | || | ||| ||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6721939 |
acccaaaagggttacaaatgttatcatccactatctcaaaaattctttctct------atgtcaccttccatgaacaagaaagttactttgttcatactt |
6722032 |
T |
|
| Q |
281 |
atcttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggcca-aaattgaggctgaaactagaggtaacaatgt |
378 |
Q |
| |
|
|||||| |||||||| | | |||||||| | ||| |||||||||||| ||||||| | | | ||| || |||||| ||||||| ||||| ||||||| |
|
|
| T |
6722033 |
atcttcagggggagaattcatgtaaggaagacaagtctcttctacttcctgaccttaatctaggaccagaagttgaggttgaaactggaggtgacaatgt |
6722132 |
T |
|
| Q |
379 |
tgagaccaaagttgattatgaaaaagatggaaatgttgaag |
419 |
Q |
| |
|
| ||||| ||||||||| |||||| ||| ||||||||||| |
|
|
| T |
6722133 |
taagacctaagttgattctgaaaatcatgtaaatgttgaag |
6722173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 672 - 955
Target Start/End: Original strand, 6722308 - 6722590
Alignment:
| Q |
672 |
gaaccagaatccagcctaataaagcataagaaaccaaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccctaaggaaag |
771 |
Q |
| |
|
|||||||||||||||| || | |||||||||||| |||||| | |||| ||||||| || | | | || | ||| |||||| ||||||| || ||| |
|
|
| T |
6722308 |
gaaccagaatccagcccaaaagagcataagaaacaaaaatctagagaagtaccaccaatagattttgaaaacttacttcttccggttgcccttagaaaat |
6722407 |
T |
|
| Q |
772 |
ataccagaacctgtaccagcaagacactctatcctctatccaacttcctatgctttgaacagttatcaaccacccataaagccttcctcacaagtctaaa |
871 |
Q |
| |
|
|| | ||||| ||||||| ||| ||||||| ||||||||||||| ||| |||||| |||| | |||| | ||| |||| ||||||||||| | ||||| |
|
|
| T |
6722408 |
atcctagaacttgtaccaataagccactctaccctctatccaactacctgtgctttaaacaataatcacctacctataa-gccttcctcaccaacctaaa |
6722506 |
T |
|
| Q |
872 |
cactaccacaatacctacctctttatctgaggcattgaccgacagaaaatggaaacaagccatgaacttggaaatggaggcact |
955 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || || ||||| |||||||||||| || |||||||||||||||| |
|
|
| T |
6722507 |
cactaccattatacctacctctttatctgaggcattgtttgataggaaatgcaaacaagccatggacatggaaatggaggcact |
6722590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 563 - 651
Target Start/End: Original strand, 6722229 - 6722317
Alignment:
| Q |
563 |
tgatccgacattacacgatgtaacttcacttgaccctataaactctagtgattcaatttctaaattttctcatccacatgaaccagaat |
651 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||| ||| ||| |||||||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
6722229 |
tgatccgacattacatgaggtaactttgcttgacccctcaaattcttgtgattcagtttctgaattttctcacgcaaatgaaccagaat |
6722317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1028 - 1068
Target Start/End: Original strand, 36778068 - 36778108
Alignment:
| Q |
1028 |
aaaatagcttatacataagtgcttaattaaaatgtttatcc |
1068 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36778068 |
aaaatagcttatacataagtgcttaattaagttgtttatcc |
36778108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 273 - 430
Target Start/End: Complemental strand, 29152 - 28993
Alignment:
| Q |
273 |
tcaaactcatcttctgggggagactataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggccaaaa-ttgaggctgaaactagaggt |
370 |
Q |
| |
|
||||||||||| | |||| ||| |||| || ||||| |||||| |||||||||||||||||||||| |||| ||| || |||||| ||||||||||||| |
|
|
| T |
29152 |
tcaaactcatcgtaaggggaagaatatatgtcaggaagatgagtctcttctacttcccgaccttactctcagaccagaagttgagggtgaaactagaggt |
29053 |
T |
|
| Q |
371 |
aacaatgttgagaccaaagttgattatgaaaaagatggaaatgttgaagttgatgtaaga |
430 |
Q |
| |
|
||| ||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
29052 |
gacattgttgagactacagttgatcttgaaaaagaaggaaatgttggagttgatgtaaga |
28993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #2
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 606 - 763
Target Start/End: Complemental strand, 48312 - 48155
Alignment:
| Q |
606 |
tctagtgattcaatttctaaattttctcatccacatgaaccagaatgtaactcattgttacataaggaaccagaatccagcctaataaagcataagaaac |
705 |
Q |
| |
|
|||||||||||||||||| ||||||| || || | || ||||||| | | ||| | ||||| | ||||||| ||||||||| |||||| |||||||||| |
|
|
| T |
48312 |
tctagtgattcaatttctgaattttcagatgcataggatccagaatcttaatcaatcttacaaagggaaccaaaatccagcccaataaaacataagaaac |
48213 |
T |
|
| Q |
706 |
caaaatccaaagaaagaccaccactacactataaagatttatatcttccaattgccct |
763 |
Q |
| |
|
|||| |||| ||||| | |||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
48212 |
caaattccagagaaatatcaccgctacactctgaagatttacatcttccaattgccct |
48155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 297 - 430
Target Start/End: Complemental strand, 49607 - 49472
Alignment:
| Q |
297 |
tataagtaaggaa-atgagtttcttctacttcccgaccttactttcaggccaaaatt-gaggctgaaactagaggtaacaatgttgagaccaaagttgat |
394 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| |||| ||||| |||| ||| || | |||| |||||||||| ||||||||| ||| |||| ||||||| |
|
|
| T |
49607 |
tatatgtaaggaagatgagtctcttctacttctcgactttactctcagaccagaagtcgagggtgaaactagatgtaacaatggtgacaccacagttgat |
49508 |
T |
|
| Q |
395 |
tatgaaaaagatggaaatgttgaagttgatgtaaga |
430 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| |
|
|
| T |
49507 |
cttgaaaaagaaggaaatgtcggagttgatgtaaga |
49472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University