View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_10 (Length: 497)
Name: NF15135_low_10
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 25884564 - 25884293
Alignment:
| Q |
1 |
ctgaaaaatcagcttcgatcctgtgcacccatttagtaagcacaactaaatctcaattactggatgcggaatgaaccttgaaccaacgacagagatttgg |
100 |
Q |
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| T |
25884564 |
ctgaaaaatcagcttcgatcctgtgcatccatttagtaagcacaactaaatctcaattactggatgcggaataaaccttgaaccaactacagagatttgg |
25884465 |
T |
|
| Q |
101 |
ctgaactgactagatggcagcggaggatcaagattccaagaaaatagttaaggtcgcaacaacaattgcagccacaaagtttttatgattatagtattta |
200 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | |||||||||| |
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| T |
25884464 |
ctaaactgactagatggcagcagaggatcaagattccaagaaaatagttaaggtcgcaaccacaattgcagccacaaagtctttatgttcatagtattta |
25884365 |
T |
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| Q |
201 |
aaaatagtctgcaactgtgattgcgaccgcaaacgaaaactattttctataccacgaatgtagcaatttgat |
272 |
Q |
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| T |
25884364 |
aaaatagtctgcaactgtgattgtgaccgcaaacgaaaactattttctataccacgaatgtagtaatgtgat |
25884293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 12 - 480
Target Start/End: Complemental strand, 25905913 - 25905453
Alignment:
| Q |
12 |
gcttcgatcctgtgcacccatttagtaagcacaactaaatctcaattactggatgcggaatgaaccttgaaccaacgacagagatttggctgaactgact |
111 |
Q |
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||||||||||| |||| ||||||| ||| ||||||||||||||| || |||||| ||||||||||||||||||||| ||||||||| |||| |||| |
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| T |
25905913 |
gcttcgatcctctgcatccatttattaaatgcaactaaatctcaatcaccggatgcagaatgaaccttgaaccaacgattgagatttggttgaatggact |
25905814 |
T |
|
| Q |
112 |
agatggcagcggaggatcaagattccaagaaaatagttaaggtcgcaacaacaat------tgcagccacaaagtttttatgattatagtatttaaaaat |
205 |
Q |
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| T |
25905813 |
agatggcagcagaggatccagattccaagaaaatagttaaggtcacaaccacaattgcagttgcagccaca--gtttt-----------------aaaat |
25905733 |
T |
|
| Q |
206 |
agtctgcaactgtgattgcgaccgcaaacgaaaactattttctataccacgaatgtagcaatttgatatatattgaacaaatgttttcaatgttacttaa |
305 |
Q |
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||||||||| |||||||| || ||||||||| ||||||||||||| |||| ||||||||| | | ||||||||||||||||||||| |||| |||||| |
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| T |
25905732 |
agtctgcaattgtgattgtgatggcaaacgaaggctattttctatacaacgattgtagcaatatcaaatatattgaacaaatgttttcgatgtaacttaa |
25905633 |
T |
|
| Q |
306 |
aagtgtctacaattgaaaacattgattatagtgttgtatgatttttcttgttgaccgaaatacatcgtat--atatgccccaaataactttttctagtat |
403 |
Q |
| |
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|| |||| |||||| |||||| ||||||||| ||||| ||||||||||||||| | ||||||| ||| ||||||| | ||||||||||| ||||| |
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| T |
25905632 |
aaatgtccacaatttgaaacatcgattatagttttgtaagatttttcttgttgagcaaaatacactatatacatatgcctcgaataacttttttaagtat |
25905533 |
T |
|
| Q |
404 |
attttcctaaa---actaatactcaactaatgtgatgctttgttattttatcattgcaatgcaggagggagactgccaat |
480 |
Q |
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|| |||||||| |||| ||||||||||||| |||||||| ||| || |||| ||||||||||| |||||||| ||||| |
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| T |
25905532 |
atcttcctaaaactactattactcaactaatgggatgctttattaattaatcactgcaatgcaggggggagactaccaat |
25905453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 316 - 480
Target Start/End: Complemental strand, 25884286 - 25884119
Alignment:
| Q |
316 |
aattgaaaacattgattatagtgttgtatgatttttcttgttgaccgaaatacatcgtatatatgccccaaataactttttctagtatattttcctaaa- |
414 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25884286 |
aattgaaaacaatgattatagtgttgtatgatttttcttgttgaccgaaatacatcgtatatatgccccaaataactttttctagtatattttcctaaaa |
25884187 |
T |
|
| Q |
415 |
--actaatactcaactaatgtgatgctttgttattttatcattgcaatgcaggagggagactgccaat |
480 |
Q |
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| T |
25884186 |
ctactattacttaactaatttgatgttttgttattttatcattgcaatgcaggagggagactaccaat |
25884119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 293
Target Start/End: Complemental strand, 25924721 - 25924449
Alignment:
| Q |
24 |
tgcacccatttagtaagcacaactaaatctcaattactggatgcggaatgaaccttgaaccaacgacagagatttggc----tgaactgactagatggca |
119 |
Q |
| |
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|||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||| || |||||||||| | |||||||| ||||||| | |
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| T |
25924721 |
tgcaaccatttagtaaacgcaactaaatctgaattactggatgcggaatgaaccttgaacaaatgacagagattatgaaccttgaactgagtagatggta |
25924622 |
T |
|
| Q |
120 |
gcggaggatcaagattccaagaaaatagttaaggtcgcaacaacaattgcagccacaaagtttttatgattatagtatttaaaaatagtctgcaactgtg |
219 |
Q |
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|| ||||||| |||||| ||||||||||| ||||||||||| ||||| ||||||| | || |||||| || || ||||||||||||||||||||||| |
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| T |
25924621 |
gcagaggatccagattcaaagaaaatagtcaaggtcgcaaccacaatagcagccaga--gtctttatgtcaatggtttttaaaaatagtctgcaactgtg |
25924524 |
T |
|
| Q |
220 |
attgcgacc-gcaaacgaaaactattttctataccacgaatgtagcaatttgatatatattgaacaaatgttttc |
293 |
Q |
| |
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|||| |||| ||| ||| |||||||||||||| | | |||||||| | | ||||||| | ||||||||||| |
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| T |
25924523 |
attgtgaccataaaatgaagactattttctatacgagggttgtagcaacgtcaaatatatttagcaaatgttttc |
25924449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 399 - 480
Target Start/End: Original strand, 25960889 - 25960973
Alignment:
| Q |
399 |
agtatattttcctaaaactaatact---caactaatgtgatgctttgttattttatcattgcaatgcaggagggagactgccaat |
480 |
Q |
| |
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|||||||||||||||||||| || | ||||||||| |||||||||||| || |||| ||||||||||| |||||||| ||||| |
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| T |
25960889 |
agtatattttcctaaaactactattaatcaactaatgggatgctttgttaattaatcactgcaatgcaggggggagactaccaat |
25960973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 448
Target Start/End: Complemental strand, 25924373 - 25924314
Alignment:
| Q |
392 |
tttttctagtatattttcctaaaactaata---ctcaactaatgtgatgctttgttattt |
448 |
Q |
| |
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|||||| |||||| ||||||||||||| || ||||||||||| ||||||||||||||| |
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| T |
25924373 |
tttttcaagtatagtttcctaaaactactattactcaactaatgggatgctttgttattt |
25924314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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