View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_11 (Length: 493)
Name: NF15135_low_11
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 42741320 - 42741790
Alignment:
| Q |
1 |
tattgaatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatt |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741320 |
tattgaatatgggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatt |
42741419 |
T |
|
| Q |
101 |
tgaaccataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741420 |
tgaaccataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttat |
42741519 |
T |
|
| Q |
201 |
atgctgaccacttactttcgtgacaacatctttgaacttccttgaaggtagtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgaga |
300 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
42741520 |
atgctgaccacttcctttcgtgacaacatctttgaacttccttgaaggtagtaaaggcatttggattaagatattacatac--ttttttctttcatgaga |
42741617 |
T |
|
| Q |
301 |
atttttacatcaccaccaaatgagacattaattgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgc |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741618 |
atttttacatcaccaccaaatgagacattaattgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgc |
42741717 |
T |
|
| Q |
401 |
accattgttaaggtaccatgaatttcc-ttaacttcattacttccacatgctagcaacattgtttcaaaactt |
472 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42741718 |
accattgttaaggtaccatgaatttcctttaacttcattacttccacatgctagcaacattgtttcaaaactt |
42741790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 21745445 - 21745909
Alignment:
| Q |
6 |
aatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatttgaac |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745445 |
aatataggtaagtaataatctttacgattgtttttcttcatccaagaccacatctcggtgaactataatcttatgtttgtttaagttgtacaatttgaac |
21745544 |
T |
|
| Q |
106 |
cataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745545 |
cataaccgagaacgtatgattcaatattctttacttatttcttgaaactatttagaagtgaattcacctcctcgaccagtcctcgtaacttttatatgct |
21745644 |
T |
|
| Q |
206 |
gaccacttactttcgtgacaacatctttgaacttccttgaagg----tagtaaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaa |
301 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
21745645 |
gaccacttcctttcgtgacaacatctttgaacttccttgaaggtaaatagtaaaggcatttggattaagatattacatac--ttttttctttcatgagaa |
21745742 |
T |
|
| Q |
302 |
tttttacatcaccaccaaatgagacattaattgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgca |
401 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21745743 |
tttttacatcaccaccaaatgagac----attgtcacttactgattcatcaagatccaagaatatatatgctcatttgttcgcacatatggttgcttgca |
21745838 |
T |
|
| Q |
402 |
ccattgttaaggtaccatgaatttccttaacttcattacttccacatgctagcaacattgtttcaaaactt |
472 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21745839 |
ccattgttaaggtaccatgaatttccttaacttcattacttccacatgctagcaacattgtttcaaaactt |
21745909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 468
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
432 |
cttcattacttccacatgctagcaacattgtttcaaa |
468 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||| |
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| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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