View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15135_low_13 (Length: 426)
Name: NF15135_low_13
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 360
Target Start/End: Complemental strand, 49223888 - 49223573
Alignment:
| Q |
31 |
atgttagaaatatacacctctctcggttgaaattcaaactttaattcgacacgtatatatcaacgccaagaaattatgtnnnnnnnntggatttggatac |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49223888 |
atgttagaaatatacacctctctcggttgaaattcaaactttaattcgacacgtatatatcaacgccaagaaattatgtaaaaaaaatggatttggatac |
49223789 |
T |
|
| Q |
131 |
taagcttaacaacttttccatttatgttacagttttgtttcttcattttttcttgaataaattgtttcataatttatgagacataactaattaaggatat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
49223788 |
taagcttaacaacttttccatttatgttacagttttgtttcttcattttttcttgtataaattgtttcataatttatgacacataac----taaggatat |
49223693 |
T |
|
| Q |
231 |
tgtacgggtaagaaattatacttgcttctccttgccaatagtgagaattattctctttgtctcattatgtgtgttatttagaatatttttatgtttcaaa |
330 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49223692 |
tgtacgggtaagaaattata----------cttgccaatagtgagaattattctctttgtctcattatgtgtgttatttagaatatttttatgtttcaaa |
49223603 |
T |
|
| Q |
331 |
ttatttgtaattttgcaataccaatacacc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
49223602 |
ttatttgtaattttgcaataccaatacacc |
49223573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University