View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_14 (Length: 389)
Name: NF15135_low_14
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 1992773 - 1992922
Alignment:
| Q |
11 |
aagaaaaggacacatgaatgacatatatagctccgtaaaatttattatttagataatgtatctaattgccacataccactattgtgatttgtcactattt |
110 |
Q |
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| T |
1992773 |
aagaaaaggacacatgtatgacgtatatagctcagtaaaattaattaattagttaatgaatctaattgccacataccactattgtgatttgtcactattt |
1992872 |
T |
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| Q |
111 |
cttcaccgtgagatttttacattttgacacattggcaagtgaagacctga |
160 |
Q |
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| T |
1992873 |
cttcaccgtgagatttttacattttgacacattcgcaagtgaagacctga |
1992922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 1997287 - 1997400
Alignment:
| Q |
189 |
atatcctatatcattaccaggagaaaaaagaccttaaatcataccgtttggttgaaataaataaaatctaactttgaattattaagctcaaatattagcc |
288 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1997287 |
atatcctatatcattaccaggagaaaaaggaccttaaatcattctgtttggttgaaataaataaaatctaactttcaattattaagctcaaatattagcc |
1997386 |
T |
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| Q |
289 |
gagtgtgtcccttt |
302 |
Q |
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| T |
1997387 |
cagcgtgtcccttt |
1997400 |
T |
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