View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_16 (Length: 312)
Name: NF15135_low_16
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 34751377 - 34751661
Alignment:
| Q |
12 |
aagaacatgagaaaatcatctagagagtatcctcggtgtctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaaatttgg |
111 |
Q |
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| T |
34751377 |
aagaacatgagaaaatcatctatagagtatcctcggtgtctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaaatttgg |
34751476 |
T |
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| Q |
112 |
gaaattatgatcccgcaattatttccttctttttccaaacctgttgctgctataggcacaacactttacatatgagacacgtcaactggtgtttggacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34751477 |
gaaattatgatcccgcaattatttccttctttttccaaacttgttgctgctataggcacaacactttacatatgagacacgtcaattggtgtttggacac |
34751576 |
T |
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| Q |
212 |
aacacttatttccagcaccattgaatacttcttacataacattggtcgagtccgatggacagatcatgtttgtgggtctgctaac |
296 |
Q |
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| T |
34751577 |
aacacttatttccagcaccattgaatacttcttacataacattggtcgagtccgatggacagatcatgtttgtgggactgctaac |
34751661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 11979993 - 11980047
Alignment:
| Q |
51 |
ctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgagaa |
105 |
Q |
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| T |
11979993 |
ctgaagttatgaaaccacaaatttgggaaaaatttcctgaagatctatttgagaa |
11980047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 11953804 - 11953856
Alignment:
| Q |
51 |
ctgaaattatgaaaccccaaatttgggaaaaatttcctgaagatctatttgag |
103 |
Q |
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||||| |||||||||| ||||||||||||| || |||||||||||||||||| |
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| T |
11953804 |
ctgaagttatgaaaccagaaatttgggaaaagttccctgaagatctatttgag |
11953856 |
T |
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