View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15135_low_3 (Length: 695)
Name: NF15135_low_3
Description: NF15135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15135_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 10587206 - 10587662
Alignment:
| Q |
18 |
gatataaatatattaaagccttaagatgaaattaattcgagtttaattggtatgcactatctcagtctcagtgtaaaaaacttctacagatgcattcaat |
117 |
Q |
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| T |
10587206 |
gatatatatatattaaagccttaagatgaaattaattcgagtttaattggtatgcactatctcagtctcagtgtaaaaaacttctacacatgcattcaat |
10587305 |
T |
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| Q |
118 |
cgcatctccttgcatatgtatctgtagagatattttaggaactaatatagcaaaatgacataataatgaaacatgattggatatttacactgatagtgta |
217 |
Q |
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| T |
10587306 |
cgcatctccttgcatatgtatctgtagagatattttaggaactaatatagcaaaatgacataataatgaaacatgattggatatttacactgatagtgta |
10587405 |
T |
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| Q |
218 |
tacaaattaaattcaattaatccaatgcacagataaggaaagtatgtagaaatcacatactcaggaagctgatcctccccagaaataattaggtatgcaa |
317 |
Q |
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| T |
10587406 |
tacaaattaaattcaattaatccagtgcacagataaggaaagtatgtagaaatcacatactcaggaagctgatcctccccagaaataattaggtatgcaa |
10587505 |
T |
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| Q |
318 |
tggcaagaaatgcaattgcaagaactggagcactgagaatcagtaaaatgcttcctgcacaacatacaagtagtttagctttgaactcacgccacatagt |
417 |
Q |
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| T |
10587506 |
tggcaagaaatgcaattgcaagaacaggagcactgagaatcagtaaaatgcttcctgcacaacacacaagtagtttagctttgaactcacgccacatagt |
10587605 |
T |
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| Q |
418 |
gaaaaaacaagattaaatacattactacaaacacatatatttgcaaagattagaatc |
474 |
Q |
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| T |
10587606 |
gaaaaaacaagattaaatacattactaaaaatacatatatttgcaaagattagaatc |
10587662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 574 - 688
Target Start/End: Original strand, 10587733 - 10587847
Alignment:
| Q |
574 |
atatttaaaccaagaaaccaaaatagaagnnnnnnntatgtattacctgtgattccaaaggaagtttcactgctgaaattaagccattttgagaacaatc |
673 |
Q |
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| T |
10587733 |
atatttaaaccaagaaaccaaaatagaagaaaaaaatatgtattacctgtgattccaaaggaagtttcactgctgaaattaagccattttgagaacaatc |
10587832 |
T |
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| Q |
674 |
catgcacaggttctg |
688 |
Q |
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| T |
10587833 |
catgcacagattctg |
10587847 |
T |
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